+Marker Data: AFAA05B05

Crop bunching_onion
Population DJF2
Linkage Group Chr2b
Marker Type SSR
Map Position 55.6
Annotation
Source Name AB499437
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ta)5(tg)23tt(ta)3
PCR product (bp) 183
fwd primer AFAA05B05-U
fwd primer seq. acaactgataaaactcaacaaacaatgtaagc
rev primer AFAA05B05-L
rev primer seq. gtttgtcctcagccacttgtcttacc
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499437
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 200
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 174 174
F1s-7s-17s-3s-1 185 185
J1s-14s-23s-9 193 193
K1s-5s-2s-2s-4s-5
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2b 55.6
SaT03 2b 0.0

DB Program Definition E-Value

EST Name Species Strain