+Marker Data: AFAA04D06

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 44.6
Annotation
Source Name AB499435
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)4aaaaatattaatacaaacc(ac)4agat(ac)4gcatgc(ac)4tcat(ac)14a(ta)11
PCR product (bp) 268
fwd primer AFAA04D06-U
fwd primer seq. agattcaagcagagtcaaggtattcaatg
rev primer AFAA04D06-L
rev primer seq. gtttattagccatgatcaacacacacaaaaa
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499435
annotation
similar marker
product size in J 270
product size in Kaizuka-Wase 270
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 288 288
D1s-15s-10s-8 260 260
F1s-7s-17s-3s-1
J1s-14s-23s-9 270 270
K1s-5s-2s-2s-4s-5 274 274
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 44.6
KiCF2 3a 65.9

DB Program Definition E-Value

EST Name Species Strain