+Marker Data: AFA23D12

Crop bunching_onion
Population DJF2
Linkage Group Chr2b
Marker Type SSR
Map Position 70.5
Annotation
Source Name AB499429
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)4gc(ac)13a(ta)8aacacatacata(tgt)3(ta)3
PCR product (bp) 299
fwd primer AFA23D12-U
fwd primer seq. aggtgcagagttacgtatatgagcg
rev primer AFA23D12-L
rev primer seq. gtttgggatgggttagaacaatgtttgg
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499429
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase 300
product size in Iki-White 300
product size in Tender Pole 310

Line allele-1 allele-2
C1s-11s-25s-7 300 300
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 280 280
F1s-7s-17s-3s-1 290 290
J1s-14s-23s-9 300 300
K1s-5s-2s-2s-4s-5 300 300
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2b 70.5
SaT03 2b 8.3

DB Program Definition E-Value

EST Name Species Strain