+Marker Data: AFA11C12

Crop bunching_onion
Population DJF2
Linkage Group Chr4a
Marker Type SSR
Map Position 49.5
Annotation
Source Name AB499409
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)4tga(ta)5(tg)7tt(tg)3ta(tg)3ta(tg)5tata(tg)8tatctatgtatgtatgtattatat(ac)4atacatacgtatgtgtatg(ta)3a(ta)3
PCR product (bp) 278
fwd primer AFA11C12-U
fwd primer seq. aggttcgagtctccaagacatca
rev primer AFA11C12-L
rev primer seq. gtttcaaggggacttgatcttgccctat
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499409
annotation
similar marker
product size in J 280
product size in Kaizuka-Wase 280
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 284 304
Cho1s-1s-2s-2s-8s 284 284
D1s-15s-10s-8 296 296
F1s-7s-17s-3s-1 294 294
J1s-14s-23s-9 282 282
K1s-5s-2s-2s-4s-5 284 284
Chiang_mai 256 256
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr4a 49.5
SaT03 4a 48.0

DB Program Definition E-Value

EST Name Species Strain