+Marker Data: AFA10C07

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 11.5
Annotation
Source Name AB499403
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)22a(ta)7
PCR product (bp) 249
fwd primer AFA10C07-U
fwd primer seq. acaacattgcaaacatgtcacaca
rev primer AFA10C07-L
rev primer seq. gtttgcactgagtttgcgttgagcta
fluor. primer AFA10C07-F(NED)
dye NED
fluor. Primer seq. NED-acaacattgcaaacatgtcacaca
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499403
annotation
similar marker
product size in J 250
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 237 247
Cho1s-1s-2s-2s-8s 247 247
D1s-15s-10s-8 247 261
F1s-7s-17s-3s-1 253 253
J1s-14s-23s-9 249 249
K1s-5s-2s-2s-4s-5 255 255
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 11.5
KiCF2 5b 27.5

DB Program Definition E-Value

EST Name Species Strain