+Marker Data: AFA10A08

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 46.6
Annotation
Source Name AB499401
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (tg)11
PCR product (bp) 290
fwd primer AFA10A08-U
fwd primer seq. atttagggcgtaaaatctaaacgct
rev primer AFA10A08-L
rev primer seq. gtttgcttttgactaacctcgcatcc
fluor. primer AFA10A08(PET)
dye PET
fluor. Primer seq. PET-atttagggcgtaaaatctaaacgct
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499401
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase 300
product size in Iki-White 300
product size in Tender Pole 300

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 294 294
D1s-15s-10s-8 294 294
F1s-7s-17s-3s-1 296 296
J1s-14s-23s-9 294 296
K1s-5s-2s-2s-4s-5 294 294
Chiang_mai 302 302
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 46.6
FA 5b 15.6
SaT03 5b 94.7

DB Program Definition E-Value

EST Name Species Strain