Crop | bunching_onion |
---|---|
Population | DJF2 |
Linkage Group | ChrX |
Marker Type | SSR |
Map Position | 69.5 |
Annotation | |
Source Name | AB499388 |
Source Type | genomic |
Source Sequence | |
Developer | NIVTS |
Document | Tsukazaki et al. (2007) Euphytica 157:83-94 |
motif | (ta)3ttactttgtgtcgagactgttc(ac)14a(ta)3 |
---|---|
PCR product (bp) | 202 |
fwd primer | AFA07G10-U |
fwd primer seq. | atcgctgtgttgtctgattctgtg |
rev primer | AFA07G10-L |
rev primer seq. | gtttcaaatggttaggagcaaccatcc |
fluor. primer | AFA07G10-F(VIC) |
dye | VIC |
fluor. Primer seq. | VIC-atcgctgtgttgtctgattctgtg |
PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
polymerase | Toyobo rTaq DNA polymerase |
Genebank No. | AB499388 |
annotation | |
similar marker | |
product size in J | 190+220 |
product size in Kaizuka-Wase | 180 |
product size in Iki-White | 190 |
product size in Tender Pole | 190 |
Line | allele-1 | allele-2 |
---|---|---|
C1s-11s-25s-7 | 192 | 206 |
Cho1s-1s-2s-2s-8s | 192 | 202 |
D1s-15s-10s-8 | 192 | - |
F1s-7s-17s-3s-1 | 192 | 200 |
J1s-14s-23s-9 | 192 | 204 |
K1s-5s-2s-2s-4s-5 | 192 | 202 |
Chiang_mai | 193 | - |
Kaizuka_Wase |
Population | Linkage Group | Position |
---|---|---|
DJF2 | ChrX | 69.5 |
FA | 5b | 36.0 |
DB | Program | Definition | E-Value |
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EST Name | Species | Strain |
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