+Marker Data: AFA06H12

Crop bunching_onion
Population DJF2
Linkage Group Chr1b
Marker Type SSR
Map Position 0.0
Annotation
Source Name AB499380
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (tg)14ttttattgtctccatgtatg(ta)4
PCR product (bp) 275
fwd primer AFA06H12-U
fwd primer seq. agaacacatagaaacagaacatagcgaaga
rev primer AFA06H12-L
rev primer seq. gtttggacattgacttttggatgtttagc
fluor. primer AFA06H12-F(FAM)
dye FAM
fluor. Primer seq. FAM-agaacacatagaaacagaacatagcgaaga
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499380
annotation
similar marker
product size in J 280
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 274 274
Cho1s-1s-2s-2s-8s 266 266
D1s-15s-10s-8 264 266
F1s-7s-17s-3s-1 268 268
J1s-14s-23s-9 268 268
K1s-5s-2s-2s-4s-5 264 264
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1b 0.0
FA 1b 51.2
KiCF2 1b 88.5
SaT03 1b 30.9

DB Program Definition E-Value

EST Name Species Strain