+Marker Data: AFA06A10

Crop bunching_onion
Population DJF2
Linkage Group Chr3b
Marker Type SSR
Map Position 144.2
Annotation
Source Name AB499377
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (caa)3(ta)8(tg)14
PCR product (bp) 282
fwd primer AFA06A10-U
fwd primer seq. attgccaggtttctttggcttaaa
rev primer AFA06A10-L
rev primer seq. gtttgctagcaccaccatttttcatgt
fluor. primer AFA06A10-F(VIC)
dye VIC
fluor. Primer seq. VIC-attgccaggtttctttggcttaaa
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499377
annotation
similar marker
product size in J 280
product size in Kaizuka-Wase 290
product size in Iki-White 260
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 278 278
Cho1s-1s-2s-2s-8s 278 278
D1s-15s-10s-8 278 278
F1s-7s-17s-3s-1 276 276
J1s-14s-23s-9 284 284
K1s-5s-2s-2s-4s-5 290 290
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3b 144.2
FA 2a 34.5
KiCF2 2a 15.4
SaT03 2a 36.7

DB Program Definition E-Value

EST Name Species Strain