+Marker Data: AFA05H01

Crop bunching_onion
Population DJF2
Linkage Group Chr1b
Marker Type SSR
Map Position 26.9
Annotation
Source Name AB499374
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (tg)9t(tg)7ttt(tg)12ttttccgtgttgcgtgt(tg)5
PCR product (bp) 221
fwd primer AFA05H01-U
fwd primer seq. acaccttccttgcacatttgctta
rev primer AFA05H01-L
rev primer seq. gtttcagagaaagatacagaagggga
fluor. primer AFA05H01-F(VIC)
dye VIC
fluor. Primer seq. VIC-acaccttccttgcacatttgctta
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499374
annotation
similar marker
product size in J 230
product size in Kaizuka-Wase 230
product size in Iki-White
product size in Tender Pole 150

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 211 211
D1s-15s-10s-8 230 230
F1s-7s-17s-3s-1
J1s-14s-23s-9 210 210
K1s-5s-2s-2s-4s-5 219 219
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr1b 26.9
KiCF2 1b 108.3
SaT03 1b 24.1

DB Program Definition E-Value

EST Name Species Strain