+Marker Data: AFA05B02

Crop bunching_onion
Population DJF2
Linkage Group Chr3a
Marker Type SSR
Map Position 87.9
Annotation
Source Name AB499370
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223

motif (ac)3tctca(ta)3t(ac)12
PCR product (bp) 192
fwd primer AFA05B02-U
fwd primer seq. agcatcgactagaattcttaagccac
rev primer AFA05B02-L
rev primer seq. gtttagcgaacacctaggctttgggtat
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499370
annotation
similar marker
product size in J
product size in Kaizuka-Wase
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s
D1s-15s-10s-8 150 210
F1s-7s-17s-3s-1
J1s-14s-23s-9 150 190
K1s-5s-2s-2s-4s-5
Chiang_mai
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr3a 87.9

DB Program Definition E-Value

EST Name Species Strain