+Marker Data: AFA03C06

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 83.4
Annotation
Source Name AB499361
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)11aacacgc(ac)5
PCR product (bp) 235
fwd primer AFA03C06-U
fwd primer seq. agtcgcctatcaacacaaatgaga
rev primer AFA03C06-L
rev primer seq. gtttggctacgtgccgcatattattgta
fluor. primer AFA03C06-F(NED)
dye NED
fluor. Primer seq. NED-agtcgcctatcaacacaaatgaga
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499361
annotation
similar marker
product size in J
product size in Kaizuka-Wase 220
product size in Iki-White 170
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 223 243
Cho1s-1s-2s-2s-8s 225 225
D1s-15s-10s-8 225 225
F1s-7s-17s-3s-1
J1s-14s-23s-9 236 236
K1s-5s-2s-2s-4s-5 219 225
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 83.4

DB Program Definition E-Value

EST Name Species Strain