+Marker Data: AFA03B07

Crop bunching_onion
Population DJF2
Linkage Group Chr2a
Marker Type SSR
Map Position 68.9
Annotation
Source Name AB499360
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ac)14aga(ta)5
PCR product (bp) 332
fwd primer AFA03B07-U
fwd primer seq. agtagttagtcagagcacagtagaagacct
rev primer AFA03B07-L
rev primer seq. gtttactaatacaataaacaactataatgctcataca
fluor. primer AFA03B07-F(PET)
dye PET
fluor. Primer seq. PET-agtagttagtcagagcacagtagaagacct
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499360
annotation
similar marker
product size in J 330
product size in Kaizuka-Wase 330+340
product size in Iki-White
product size in Tender Pole

Line allele-1 allele-2
C1s-11s-25s-7 328 328
Cho1s-1s-2s-2s-8s 328 328
D1s-15s-10s-8 328 328
F1s-7s-17s-3s-1 328 328
J1s-14s-23s-9 336 350
K1s-5s-2s-2s-4s-5 334 334
Chiang_mai - -
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr2a 68.9
SaT03 2a 33.3

DB Program Definition E-Value

EST Name Species Strain