+Marker Data: AFA02F09

Crop bunching_onion
Population DJF2
Linkage Group Chr8
Marker Type SSR
Map Position 0.0
Annotation
Source Name AB499356
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (at)3(ac)14a(ta)3tg(ta)3
PCR product (bp) 288
fwd primer AFA02F09-U
fwd primer seq. actaggttcattaggggactatagga
rev primer AFA02F09-L
rev primer seq. gtttccaagcaccagtatctgcctttct
fluor. primer AFA02F09-F(NED)
dye NED
fluor. Primer seq. NED-actaggttcattaggggactatagga
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499356
annotation
similar marker
product size in J 280
product size in Kaizuka-Wase 290
product size in Iki-White 280
product size in Tender Pole 290

Line allele-1 allele-2
C1s-11s-25s-7 292 292
Cho1s-1s-2s-2s-8s 290 290
D1s-15s-10s-8 267 267
F1s-7s-17s-3s-1 294 294
J1s-14s-23s-9 290 290
K1s-5s-2s-2s-4s-5 296 296
Chiang_mai 266 266
Kaizuka_Wase

Population Linkage Group Position
DJF2 Chr8 0.0
FA 8 46.9
KiCF2 8a 61.0
SaT03 8a 58.9

DB Program Definition E-Value

EST Name Species Strain