+Marker Data: AFA02

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 21.5
Annotation
Source Name AB499352
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ta)7(tg)12
PCR product (bp) 171
fwd primer AFA02-F
fwd primer seq. accttggtaatggcaaagact
rev primer AFA02-R
rev primer seq. catagcctcacatctctcactc
fluor. primer AFA02-F(NED)
dye NED
fluor. Primer seq. NED-accttggtaatggcaaagact
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499352
annotation
similar marker
product size in J 180
product size in Kaizuka-Wase 160
product size in Iki-White 180
product size in Tender Pole 180

Line allele-1 allele-2
C1s-11s-25s-7 176 184
Cho1s-1s-2s-2s-8s 194 194
D1s-15s-10s-8 182 182
F1s-7s-17s-3s-1 180 180
J1s-14s-23s-9 178 178
K1s-5s-2s-2s-4s-5 194 194
Chiang_mai 182 182
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 21.5

DB Program Definition E-Value

EST Name Species Strain