+Marker Data: AFA01A08

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 22.8
Annotation
Source Name AB499341
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2007) Euphytica 157:83-94

motif (ta)7(tg)14tatctaagggcatctgagt(ga)3
PCR product (bp) 296
fwd primer AFA01A08-U
fwd primer seq. agataagtgctcatggagcaaggg
rev primer AFA01A08-L
rev primer seq. gtttacatccacagcaaacatagcaagc
fluor. primer AFA01A08-F(VIC)
dye VIC
fluor. Primer seq. VIC-agataagtgctcatggagcaaggg
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499341
annotation
similar marker
product size in J 300
product size in Kaizuka-Wase 280+300
product size in Iki-White
product size in Tender Pole 320

Line allele-1 allele-2
C1s-11s-25s-7 300 300
Cho1s-1s-2s-2s-8s 314 314
D1s-15s-10s-8 306 306
F1s-7s-17s-3s-1 304 304
J1s-14s-23s-9 302 302
K1s-5s-2s-2s-4s-5 314 314
Chiang_mai 253 302
Kaizuka_Wase

Population Linkage Group Position
DJF2 ChrX 22.8

DB Program Definition E-Value

EST Name Species Strain