| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_10 |
| Marker Type | SSR |
| Map Position | 27.447 |
| Annotation | |
| Source Name | emh11B18 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNTTCGAAACCGGATTTGTGGAAGG ATTGGCATTATTAATGAAACTGGTACGCATTCAGCGGAAG GACTATCTCCAAAATTATGCAAGAAACAACCAATAAAAGA AAATTGAGTAAGCAGCAAACAACCAATTACAAGAAAAACA AAACCAACCTCCAGTTCTCGTTTTTCATCATCCAACATAT TGATTTCGGATTGTAACTGCCTAAGCTGCAACTTGAAGGA TAGACAGGAATCACTACATTATAAAATATAAATACATACA TAAAAATATCCTCTCTCTCTCTCTCTCTCTCTCTCCCCCT CTCTCTCTCTCTCTCTCTCTCGCGCGCGTGTATATATATA TATATATATATATAATGAGGATATAAGACAGAATGGGCAA AAGGAAGGATGAACTCTGCGATTTGGGAACTAGGATGACA AAGTTCTCCGCTCCTTGTNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)12cccc(tc)11g(cg)3tg(ta)12 |
|---|---|
| PCR product (bp) | 269 |
| fwd primer | emh11B18/U |
| fwd primer seq. | aacaaaaccaacctccagttctcg |
| rev primer | emh11B18/L |
| rev primer seq. | caaatcgcagagttcatccttcct |
| fluor. primer | emh11B18/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atcaaaaccaacctccagttctcg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 266 | 266 |
| EPL-1 | 266 | 266 |
| LS1151 (S.linneanum) | ||
| LS1934 | 266 | 266 |
| LS4021 (S. incanum) | 308 | 308 |
| Nakate Shinkuro | 266 | 266 |
| Senryo 2 | 266 | 266 |
| Shironasu | 266 | 266 |
| WCGR112-8 | 264 | 264 |
| White Egg | 266 | 266 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG09 | 21.2 |
| LW2010 | E_10 | 22.8 |
| LWA2010 | LWA_10 | 23.762 |
| LWAE2012 | E_10 | 27.447 |
| LWF2_2022 | E_10 | 22.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
