| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 16.06 |
| Annotation | |
| Source Name | OVL01E02C |
| Source Type | EST |
| Source Sequence | GGGGAGCACAGATATTACTGTTTCTAGATGTCACTTTTCA AAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTA ATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTG TTTTTTCGATGGAACTAGACAGCGGCATCCTCGAGTTAGG TTTGCCAAAGTACATTTGTACAATAACTACACCAGGAACT GGGGAATTTATGCTGTTTGCGCAAGTGTAGAATCACAGAT ATATTCGCAGTGCAACATATATGAAGCTGGACAAAAAAAG GTGGCCTTCAAATATATCACGGAGAAGGCAGCTGACAAGG AGGAAGCATGTACTGGTAGCATTAAATCTGAAGGTGACTT GTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGC AGCAGAAATAACGTCTTCAATCCATCCGAGTTCAACCAAA CATGGGTCTGTTGAACGTCCCAGCGATGATCTCAAACATT ACCTTCAACATTGTACAGGATGGCAGTGTATCCCGCGGCC AAATGATCAGCCTTCTCCTGTTGGTTAGAACTACCTAAAC GAACAGAGACGATTACATAAATGTGTGTGTGTATATATTA CTACAACGTCATTTTTCGTCGATTTGTTGTTTGGATCTCC TGTCTTTCCTCAGTCTATTGTTGCTGTCATTGTATCAATG TATTATGTTAGCATGAACTGTAACTAAGTGAATTAAGAAA TTCCTAAAATTTCTCATGCTTTAAGCCTCTTTCGGTATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)5(ta)3 |
|---|---|
| PCR product (bp) | 235 |
| fwd primer | ecm037/U |
| fwd primer seq. | aaatgatcagccttctcctgttgg |
| rev primer | ecm037/L |
| rev primer seq. | ccgaaagaggcttaaagcatgaga |
| fluor. primer | ecm037/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atatgatcagccttctcctgttgg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 241 | 241 |
| EPL-1 | 242 | 242 |
| LS1151 (S.linneanum) | 242 | 242 |
| LS1934 | 242 | 242 |
| LS4021 (S. incanum) | 243 | 243 |
| Nakate Shinkuro | 242 | 242 |
| Senryo 2 | 242 | 242 |
| Shironasu | 242 | 242 |
| WCGR112-8 | 242 | 242 |
| White Egg | 242 | 242 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 24.6 |
| ALF2 | AL09 | 25.2 |
| LWA2010 | LWA_09 | 31.725 |
| LWAE2012 | E_09 | 16.06 |
| NAF2 | NA09 | 33.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
