+Marker Data: gg53_1814

Crop eggplant
Population LWAE2012
Linkage Group E_09
Marker Type SNP
Map Position 19.796
Annotation
Source Name FKO03-01.6262.C1
Source Type 43k_SmUnigene
Source Sequence
Developer NIVTS
Document
Typing_Method GoldenGate
454-Contig_ID eggplant_rep_c53
454-Contig_seq (unpadded) GTTATAATCATACCTATAACCAAATAGCTCAATTTAACCGCTCAGGGGAGAGAAACGTGCCCTTATAGGAAAGCACATTGTAACCGACCTTCGACAGAAAAGTTCCCATAAATATTGCTTTTGGCCAAAGAAATACAAATGAAACCAACTNCTATAAATTCTCAGGAAACCTTACCGTGACATGTAAAAAANACCCAGGCATGGACCNAAAAGAGGNGTACCGTTTCCACCCAAGTGATTCAGAAATAGTTAAGTTTTTATTACGATTTGTGGCGAAGCAAGAGATGCATGATGGTGGATTTATCACCACCAACATAGATGTCTATGGTCAACAAGAGCCATGGGAGATTTACAATCAGGGAGTACCCGCTGGAGGATTAGATGATGACAATGACAGTAGTTATCGGTACTTCATCNACAAAGAAAAGCAACAGGATTGATCATGGCTGCTTTTGGAAACAACAAGACGAGGGAAAACTAGTTCACTATAATATGCACAATTCATCATCAACAATTGTTATTGGATACAAGAAAAAGATGCATGAAGATGGACATTGGATCATGAAGGAGTATCAACTTTCTATGGCTATTCTTCTTAAGTTCGAGGAGGACCGNCAGAGATTATGTCCTGTGTGCCATCAAGGACACTTGTTCTTCAGAATGATGTATGAACTTTAGAAACAATGTAGAAACGTTTACCTGGCTATTATAGCAAAATGTTTTANTGGAAATTGATTGCCATAGACAGTTAGATTTTTCATACGGGAACTGCAGTCCGCTGTTACAAACTAATTCATGTCAGCATTCATAATTGGAGAAAAATGGAAAGCTCAAATTTGTTCTAGTAGTTGAATTTCGGTTACAGCAACTGATATGCTCCTTGACTAGTGTCCCCATAAAAAATATATAACAATTGCATCAATTCTTCATTCAATTCTATTACAGTATTCTAGTCCATTCTGCGTATGGGTTTTGAAATGAGGTTTCCNCAGGAAACAGCCTCTTAACTTTGGCAGTGGTAAAGTCTGCATACATTCTACCCTCCCAGANCCCCACTTGTGGAATTTCACCGGGTATTTTGTTGTTGAATTTCAAAACTAATTACCCCCTTAAATGCCACCNTTTGTTCTCTTACTGTAAGCCCAACATCGCCNTTTCTTTTGNATCGACCTGGCTGAATGAATGAAAAGTAGACCAATTGATCTTCCAAGCTANTAATACATCTATTGNAAATCATTCTTCATCTGTAAGATGATACAGCNAAAAAGGATGTTTAGTTATTCCCACAGCTTNATGGGAACANTTTTTTGACGTGCAGTTGCGAATAAAGTCACTCCCACCTGAAATGCCAAGAAATTTCCCGTATGATGAATATCCGCGTTCACNAATTTCATGTAGTCATGTTTCTTGAAATGAGCTTGTCTCCNAAGCAATGCAACTTTCCAGCAATCCACTTGTAGCANTAAACACAGNAAAGCTTTTTTGGTACAACTGCAATTCAAATAAGCAACAAGATGAGAAAAGGATTAACAAGAACTGGTCTTCTGCATTCTTTCCCCATNCCCCTTCTCTTCTCTTGGAACAAATTGATAAGGGAAAGAAAAGCTATGTTGTTCGGACTCTTCAAAATGCCGCCTAATGCATGTTAGATCCAACATGAGCTGCAGAATTTTTGAAGAGTCCGAGCAACATAGAAGAGACGTAGGTTTTCCNAAATTACAAACAAGGTGCATCAAGTAAAAGGTTCAGGTTGCAATGATAGCATGGGTGACAGCTCACAGCACAATGGAAAGTGAAAGAACTAAGAATAGCTGAAATAAGGAAAAGGTTGGAGAGAGTATTTACTGGATGAGCCTATATAGAGGTATAGTTCCTAGGAGGGGATGACTATTACCCCAAGATTTCTTTNCAAAACAATAGCAAAATGGTTTAGGAACCAAGTTCCTTTGGATTCAAAATTGAAATACAAGCNTTTTAAAGCTAAGGATGTGAATNGGCATTAGTAGAAATGAAAGTTAACAGNAACTTTAAAATACTGCCTCAATTGGTGGTATAATTCATCGTTCATAAAGGTGAGTGGCCCAAGCAAAAATCACTCAACCAAGAACTAAGAATAAAAATATAAATAAATAAAAAAGGAGAGGAGCAAGATATCATCATATTTGTTCTACTCCAGTAGCAAGGCTACTGAAAGTAGACTGCAATGGACATATATGTGCNAACATAACTGTCATATTGTNAGCCNAAGTAAATCTAAGTTGAACAGGATAGACCTTGGAATTTGTTCTCTTCTGTGATTATTCCAAANTNGTTTCTACGGTCTCACGAATCATGATACCACATATGCCAATAAAGCCTGCTATTTTGNCACTGNAACAACTGCATGAAATNAAATGTCATAATGTCTNCGGAAACNAAACAGTTGTATTATCTGTGTGTATGTGCCACACCGTGCAACAGTTAAACAGTNGNAAAATTTNTGTNCTATNCAAAGTNTCTATTATGCAGGCTTTAGATAAGATNAACCCCTTATCGNTAATTTAGCTCATNCACTNAAAAAAATNGCTTAGATCCTTGTNAAAACATTAATGACAAGACAGAATCAGCCTGTAATAATATAGAATTTCCTNTGNTAATAGNTTTTGNAAGNAGNTTAAAGAGGAGAAGTAAAAGGATGCCAGCTGTTTTTNCCAAAAGGAAAAGATTCCCATCAACTTTCGGCAACCAATCAAGGATGATAAGGTGCTCTCCTTCAAACCAATCAGAAANAGGGCAGCGTAAAAGGCCTCAACCAATCAGATGAAGGCAATTAGCTTTTTCAAAGNCTTTAATGGNATGTGCTCATGTAAGCTCCAGCTTCATTNTGTAAGTTTNTAAGTTCNTTTAACTCCAACTCTTCTAGNCTCCACTTCCTCTAGTAAAAGGTACCCNCACTCCTTCTAGATCTACCACTAAGCAGACATCTCCGGAGNCTTATCCNCTGAATCGGTTNTCTTNCAACNTTTTAAAGAGAACNTCCANAGAAAGTTCACGGAGTAGACTTCAACCTTAACATTCCTAAGGTTTATANTTANTGAANCCTGAACCTCCCTCCTAGTCCCACCGCTAGTGATATGAGGCCCACTCATACACGTCAGGATTCCCTAGGAGTACTCACTTCTAGTGATGAGTTCACAATCAATCGTGACCTCATTCNGGGAGTGGTGGAACGACTGGTATGTTTCTNACCAAGTATAANACCAAGCACTTCTATTCCTGATNAAACCACACTCTTATATTCCTGATAAANCCAAGCACTTCCAGCCCAAACATTNGAAACTAATCCTATCTTNCAAGGTCCCAGAATTCTCCAGAGAANAACTATCCTNAAGCTCTCTGCCGAANTTTAGTCAGTCTTCTGATCTTCTGGATAAGATCAACCAAGAACNTCTNCCAAGCTTAACATTTCNCAGNAGGAGAAGTCAGTNACTCGTCTGACTAGACAAGATTGGCANCCCGCATAAGAGAAACTTCTATTCTAAGCCCCGAGGCGTGTTTGACGGATCCAGCATCATAGCATGGAATCTTGATGGTATGGCAGAAGAACAAATTTATANACTTGCTCCAGAAANATGGGGATAGCGGTCACGGCTTNACAAACTCAAAGGAGCTGGTGATAAGCAATCAGCCACAATGCTCATTGCAGGGTTTACGGGAANACCTAAAAANATTNGGTGGNAATAATTATCTCACTGACGGGGACAAGAATGCCATTCAGAATTCTGCAACCACCAAANATGGTAGTCAAGACAGAAGGAGGAATGGAAAGGTNCCTCTGAAGAAANTTGTGGAGGATGCTACCACTACCNCTGCTTTACTGCATCGCCAAGNAACTTCATAGGAGAACCTAAACNTTTTCCAAGATAGAAATCTGGAAATCCTCAACAACCTTTATTGCAAANAGGCTTACGGACTTCAGATGGTATAAGGATATGTTTCTCAGTAAGGTTATGATTAGACCTGATTGCAGTAACGATTATTGGAAGGAAAGATTNTCTCAGCGGCCTACCATCTCTCTTTGCAGAAAANAGTTAGAACCAAAATTAGAGATAGATATAATGGAAAAATTCCTTANCCCTCAACTCTCCTATGGTGACCTTATCCGTNACCATCAATATGGTAGCCACAGACCTTTGCACTGATCTCAAGCTGGAAGAACAGCTTNAAAAAGGATCCTAGAAAGACAGCCCACGNAATTAGAAAGCTTTTGTCAGGACTTTGGATTCGCGGTCTTAAAACCCCNCTTCAGCTAGAAAACCTGGCAAGAAAGAAAGAAGAGGCAAGTATAATGATTGATGAGTCTTAGATTGAAGGACCCCAGAGAGGGTCCCAGAAATTTTGCCTTNTCCAAANAGACCATTTCCTNCTGTCACATCCTGGCCGACAAAAGCATAGGATGCCAGTTGCTTTTCCNAAAAGGAAANAGNATTTNCCATCAACTTTCGGCAACCAATCAAGTGATGATAAGGCGCTCTCNCTTCAAACCAATCAGAAAAGGGCAGTGTNAAAAGATCTNCAACCAATCAGATGAAGGCAATTAGCATTTTCCCCTTGTATCTTAGGTATCATCGAAATTTTTTNAGNACTAAGTTTCTTTNCAAAGNCTTTAATGGATATGCTCATGTAAGCCCCAGCTTCATCAATAAAGATCATTGAGTTTTTGTAAGTTTTATATACTGTGTCTCTTTAAAAGTTATCTTGTTTAAATTTCCTTCTATGAGAAAGCCAAGAACCTTTAAAANACCTAAACGAAAAGTTAATTGGAAAATCATCTGCTTGCATACCCCTCTTAATAAAATAAGAGTAATAATCTTTCAAAGAAGATAAAACTATTGAGTTTCTGACTACCTGTAACCCGATCATGTTTTATGGTATCAGAGTCAGGTTTTCTTGCTGAAGGGGGTTTTAAGACCGGGAATCTGAAGTCCTGACAAAAGCTTCCTAATTCGTGGGTTTTCTTTCTATGATCCTTTTTCAGCTGTTC
SNP_position 1814
sequence_for_GGdesign AATGATAGCATGGGTGACAGCNCACAGCACAATGGAAAGTGAAAGAACTAAGAATAGCTG[A/G]AATAAGGAAAAGGTTGGAGAGAGTATTTACTNGATGAGCCTANATAGAGGTATAGTTCCN
GGdesign_Final_Score 0.817
Ilmn_Id 53_1814-0_T_F_1967851946
allele_1 A
allele_2 G
Line allele-1 allele-2
Population Linkage Group Position
LWAE2012 E_09 19.796
DB Program Definition E-Value
EST Name Species Strain