| Crop | tomato |
|---|---|
| Population | GM_RIL_4K |
| Linkage Group | T05 |
| Marker Type | SSR |
| Map Position | 81.534 |
| Annotation | |
| Source Name | 346780S |
| Source Type | genomic |
| Source Sequence | aaggatgggtatccgatttattGAAGAAGAAataatctta caacaagtgaggtacgaggaatgaagatgactacccaatg ggttgtacattataatccatatttgttgaggcgataaaat tgtcacattaatattgaggtatgctcaggagttaatgcaa taaataaataaaTATATATATATATATATATATATATATA TATATATATATATATATAtgaaggtcatgataaatgtgcc atacacgttgaatacaatgatggggaacaaatcgttgatg aaatcaatagatttcaagatgcacgatgggtgtctccact agaagcaatgtggagaatttatgagtttaacgtaactgaa atgcaactggcagttaataacctacaattatatctaccag gcaaacaatcaggcaatttatagatttctgtcagattgta tacatACACACaatttctaa |
| Developer | NIVTS |
| Document | Ohyama et al. (2009) Mol. Breed. (in press, DOI: 10.1007/s11032-009-9265-z) |
| motif | (ta)23 |
|---|---|
| PCR product (bp) | 272 |
| fwd primer | |
| fwd primer seq. | cgaggaatgaagatgactacccaa |
| fwd postlabel primer | tma0146U |
| fwd postlabel primer seq | agaggaatgaagatgactacccaa |
| rev primer | |
| rev primer seq. | gcttctagtggagacacccatcgt |
| rev postlabel primer | tma0146L |
| rev postlabel primer seq | gtttctagtggagacacccatcgt |
| postlabel dye used | R6G-ddCTP |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| A10 (PL11) | 271 | 271 |
| Ailsa Craig | 269 | 269 |
| Fixed Timely | 273 | 273 |
| LA716 (S.pennellii) | 298 | 298 |
| LA925 | 271 | 271 |
| M82 | - | - |
| MMF (Fixed Momotaro) | 271 | 271 |
| Micro-Tom | 239 | 239 |
| PL9 | 283 | 283 |
| Reika | 273 | 273 |
| Population | Linkage Group | Position |
|---|---|---|
| EXP2k_tm_081031 | T05 | 83.47 |
| GM_RIL | GMRIL_05 | 51.5 |
| GM_RIL_4K | T05 | 81.534 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
