| Crop | tomato |
|---|---|
| Population | GM_RIL |
| Linkage Group | GMRIL_02 |
| Marker Type | SSR |
| Map Position | 0.0 |
| Annotation | |
| Source Name | 131072S |
| Source Type | genomic |
| Source Sequence | agcttacatacacttctcatttagcaatataagcaatttt gtttacatattctaatattgtctcacattcaccatctatt aataagatcaagaaatgtctacaaatggtatccttagccc tttACACACaatactctttagaacaaatgtacataagaaa gatttattaagtctattacatcaatagaaaaacataaagt ggtatcaggtgtatatgttctcagaaccacaagccttggg gatgagaaatcaagctttcttcaagagtggaggagcaacc aactagccggaagctatacacataatataaagggggaaaa cgggttagtacaaatgcataaaagaaaacttttaaaacat gtgaaaggaagaTATATATATATATATATATATATATATA TATATATATATATATATATAaaaccctagaatttaccctg tttgaaagattaggaatcaagtgtcatgattaccctagtc caaatcatagttggaatgaaagacaagattctataactcg ataaatatcaattacatactacatgctcatatttactcaa ttattgcatgaactttaggttataggtgcacatgggttct tggaagatttttacaatagaattcatcaattaatctcaat ataatcataatataagacatataacatgaataaaacgatt taggaatgaacccatggctagatcacaacaccctagtttt tgtcacattatagatttaaaaa |
| Developer | NIVTS |
| Document | Ohyama et al. (2009) Mol. Breed. (in press, DOI: 10.1007/s11032-009-9265-z) |
| motif | (ta)24 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | |
| fwd primer seq. | aaagggggaaaacgggttagtaca |
| fwd postlabel primer | tma0121U |
| fwd postlabel primer seq | atagggggaaaacgggttagtaca |
| rev primer | |
| rev primer seq. | ttccaagaacccatgtgcacctat |
| rev postlabel primer | tma0121L |
| rev postlabel primer seq | gtttccaagaacccatgtgcacctat |
| postlabel dye used | R6G-ddCTP |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| A10 (PL11) | - | - |
| Ailsa Craig | 297 | 297 |
| Fixed Timely | 326 | 326 |
| LA716 (S.pennellii) | - | - |
| LA925 | 295 | 295 |
| M82 | 323 | 323 |
| MMF (Fixed Momotaro) | 323 | 323 |
| Micro-Tom | 307 | 307 |
| PL9 | 281 | 281 |
| Reika | 324 | 326 |
| Geronimo | 297 | 299 |
| Momotaro 8 | 323 | 325 |
| Population | Linkage Group | Position |
|---|---|---|
| EXP2k_tm_081031 | T02 | 5.85 |
| GMF2 | GMF2_02 | 0.0 |
| GM_RIL | GMRIL_02 | 0.0 |
| GM_RIL_4K | T02 | 0.234 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
