| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 1.944 |
| Annotation | |
| Source Name | emh21P02 |
| Source Type | genomic |
| Source Sequence | ACAACCACTTGTCTATACAGGCTGCGTGAAAATGGTGACG ACAAGGGAGCTCACGGAGTTCAATTCCATCTTCATAGGAA CAAAGGCAAATGCAACATTCCTGCAGACGTAAAGATAGAA TGTAACTTCTAGGACTCGGAAAGTTAGAGATATACTTTAT GAAAACTTCTTGGCTGAGAAAAGACATGTTTCACAAAACA TACAGCATCTTCTGGGGAAAGAGCATGCTCAGTAGGCGTA TCGGTGTCACATTCAACCATTACTCCTCCAAATGATTCTT GAATCTCACCATTCTCTTTCTCAAAGTTGCCTAGTCTCTT GAACTTGTATTTAGGCAGTCTTTCAACATCTTCCTTAGTT GCACCTTCCTGTTTCAAAGGATAAGTAAATTATGAGAGAG AGAGACAGAGAGAGACAGAGACAGAGAGAGAGAGAGACAG AGAGAGAGAGATGATCTGAGTAAGAAAAGCATTCGACAAG ATTTTCAAGTTGATAAGATTGGTCGAGTGGTCTCAATGGG AGATGAAAACGCGTGTTTGTGGATTGAAAGAGATTCAAGT TGGGGGATCAATGTGAGGACATCAATTCAAATCCTTGGGG ATTCCGGCAAAAGCTGAAATTCCAGTTGCATTTTATTTCA CAAGGGTGCAGAGCCTACTACACCTTTTCTATCACTTCGA TTCGTATTAGAATGCACACAGCATCACCTTTCAATAATAT AGAACGGAGACTGTATTGTCCTATATAAAAGATCTTTTCT TAAAAGAACTTAACAAAAGGCACAAGAAAAATCCCCAACA ACACTGATCTACCATCCTCCGTTTTATGTTTCTAAAATTA ACTCGGATGTATGAAATAAACCAAAAAAATGGATGATCTA ACAAAATTTGCAACAATTCTTTGAACCATATTGAGAAAAA CCAATATATTGTGTAACAAGGAGCTCTAACTCAGACAACA TATTAAAAAGAACAGCTACCTCAAAGCATACATATACACA CGCGCGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5ac(ag)4acagagac(ag)7ac(ag)6 |
|---|---|
| PCR product (bp) | 283 |
| fwd primer | emh21P02/U |
| fwd primer seq. | cgtatcggtgtcacattcaaccat |
| rev primer | emh21P02/L |
| rev primer seq. | ccattgagaccactcgaccaatct |
| fluor. primer | emh21P02/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtatcggtgtcacattcaaccat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 287 | 287 |
| EPL-1 | 285 | 285 |
| LS1151 (S.linneanum) | 280 | 280 |
| LS1934 | 285 | 285 |
| LS4021 (S. incanum) | 293 | 293 |
| Nakate Shinkuro | 285 | 285 |
| Senryo 2 | 285 | 285 |
| Shironasu | 285 | 285 |
| WCGR112-8 | 305 | 305 |
| White Egg | 285 | 285 |
| PI 286106 | 289 | 289 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 0.0 |
| ALF2 | AL05 | 0.0 |
| LW2010 | E_05 | 2.0 |
| LWA2010 | LWA_05 | 2.145 |
| LWAE2012 | E_05 | 1.944 |
| LWF2_2022 | E_05 | 0.0 |
| N28F2 | E_05 | 0.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
