| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 0.0 |
| Annotation | |
| Source Name | emh01L14 |
| Source Type | genomic |
| Source Sequence | ACCAAGGCAGTATCCTTTTCTGCTACTACTTTTTGATTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTATCT ATCTATCTATCTATCTCTGTGTGTGTGTGTGCGCGCGCGC AACCCCCTTCCCCCCCTCCTTCCTCCCTCCTCCCTCCCCA ACACACATCTAAATCGCTTATCAATTTGATTTTTGAGATT AGGTCTGTTCGTAGATAGCATATTGCTCTTTGTTTGCTTG CTTGAGTAGGCATATTTCTATCCTTGGATATGATTTCTTT AACCGGTCAAGATATTGATGGAGCTTACTTTGGGACAACA TTTCCTCACCTCTTCTTGATGACTTATGGACACCTCAAGC CGCAAAAACCAACACAGAACTTCACCCCCAGGGTGTTTGG TTTCAAGATCCACAAGACTTGACAGTGAAGTCAAGTTATG ATGTTGTGAACAAATCAAATTTTCTGGCAGTAATGATTCT TGCCAGGTAGCTTTGATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)17tatctatctatctatctatctatctc(tg)7(cg)4 |
|---|---|
| PCR product (bp) | 175 |
| fwd primer | emh01L14/U |
| fwd primer seq. | accaaggcagtatccttttctgct |
| rev primer | emh01L14/L |
| rev primer seq. | gatttagatgtgtgttggggaggg |
| fluor. primer | emh01L14/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-accaaggcagtatccttttctgct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 175 | 175 |
| EPL-1 | 177 | 177 |
| LS1151 (S.linneanum) | 159 | 159 |
| LS1934 | 169 | 169 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 175 | 175 |
| Senryo 2 | 171 | 171 |
| Shironasu | 173 | 173 |
| WCGR112-8 | 179 | 179 |
| White Egg | 175 | 175 |
| Population | Linkage Group | Position |
|---|---|---|
| LW2010 | E_05 | 0.0 |
| LWA2010 | LWA_05 | 0.0 |
| LWAE2012 | E_05 | 0.0 |
| LWF2_2022 | E_05 | 2.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| SGN_marker | BLASTN | SSR483 [ssr] | 9e-06 |
| SGN_marker | BLASTN | SSR277 [ssr] | 9e-06 |
| EST Name | Species | Strain |
|---|
