| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 44.986 |
| Annotation | |
| Source Name | emi04H17 |
| Source Type | genomic |
| Source Sequence | CTTATCTTGAAGAAAGAATAGGCAATATATATATATACAT ATACTTGATCCCCTCAACCTTACACTTGCTCCAACCAAAT TGTGACACAACTTGAGTGGACCCAACTTTTAATTAGATAA CTCTTGGTTTTTTTCTTTCCTCGATAAGAAGACAATTGTT TTAGATATTTAAAGAAGGCTTACATGAGCGCGCGCGCGCG CGCGCTCACACACACACACACACACATATATATATAAGTT TATACACATACCTCTATGAAATATTCCAACTTGAGTTCTC AAACTTTTTCAAAAATACACTTAAGTCCTGAATCTTTCAA AAGTTGCAACATTGATCCCGAATTTAGTAATCGTTTCAAG ACACCACAATACGGGTTCTGACATCCTCCCCCCTTTAAGA ACATTCATCCTCAAATGTCATACTAACCATGTGAGTTTTC AACTTCTATAACACAACATCCAACAATGAACAGCTTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (cg)8ctc(ac)9a(ta)5 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | emi04H17/U |
| fwd primer seq. | tgtgacacaacttgagtggaccc |
| rev primer | emi04H17/L |
| rev primer seq. | cagaacccgtattgtggtgtcttg |
| fluor. primer | emi04H17/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agtgacacaacttgagtggaccc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 298 | 298 |
| EPL-1 | 299 | 299 |
| LS1151 (S.linneanum) | 259 | 259 |
| LS1934 | 299 | 299 |
| LS4021 (S. incanum) | 304 | 304 |
| Nakate Shinkuro | 299 | 299 |
| Senryo 2 | 299 | 299 |
| Shironasu | 299 | 299 |
| WCGR112-8 | 299 | 299 |
| White Egg | 304 | 304 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 8.4 |
| LWA2010 | LWA_03 | 35.582 |
| LWAE2012 | E_03 | 44.986 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
