| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 17.309 |
| Annotation | |
| Source Name | emi02F16 |
| Source Type | genomic |
| Source Sequence | CTAAATTATTTAATTTCTGTTTTACATATATTATGTGATA TATTTATGATTATTGTTATTAAGTAAGATTATTCATATCT TATACAATGTTTGCTAGCATAGGAAATAGAGGATAAAACT TCTAGAACTAAGCCTTCCAAAGTGGAAAAACCAAGAAAGG CAGGCGGCCGTAATAGGGTTAGTACCAAATTGTTGAGGCA CTGTTTAAGAAGATAATAATCCTGAAAAAGTATGATGCTA GTAGTGATTAAGTATAAGAAAATGAATACCTTAGTTAATA ACAAGCTTGAACATCCTTCGGGTATGTTTCATATTTGGCT TTTGTTTTACTCAGTGTGCCCCTGTTTATTTATATCTTGG TTGAACATATTTAGAATCTTAATTAGATGTAGAGTTTTTT TGTGTGTGTGTGTGTGTGTGTGATATGTGTATACATAGAG TGAGGACATGATGTGATTTCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)11 |
|---|---|
| PCR product (bp) | 181 |
| fwd primer | emi02F16/U |
| fwd primer seq. | acaagcttgaacatccttcgggta |
| rev primer | emi02F16/L |
| rev primer seq. | tgaaatcacatcatgtcctcactc |
| fluor. primer | emi02F16/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acaagcttgaacatccttcgggta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 188 | 188 |
| EPL-1 | 188 | 188 |
| LS1151 (S.linneanum) | 181 | 181 |
| LS1934 | 196 | 196 |
| LS4021 (S. incanum) | 181 | 181 |
| Nakate Shinkuro | 188 | 188 |
| Senryo 2 | 188 | 188 |
| Shironasu | 188 | 188 |
| WCGR112-8 | 210 | 210 |
| White Egg | 188 | 188 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 0.0 |
| EW2009 | LG10 | 0.0 |
| LW2010 | E_03 | 8.2 |
| LWA2010 | LWA_03 | 8.235 |
| LWAE2012 | E_03 | 17.309 |
| LWF2_2022 | E_03 | 8.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
