| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 45.521 |
| Annotation | |
| Source Name | emh11O01 |
| Source Type | genomic |
| Source Sequence | ACGTATTAATTACTTTAAAAATTATTTATGAGAGTGATGC ACACTCTCTATGCCACTTTAGCATTATGAGTATATTTATT CCATTTTAAATAGTTAGGGGTAATAGGAACTTAGTTAAGT TAAGATGTGTCGATGAGATTTTGGTCATAGTGTTTAGGAG TTACTTATGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTTAAATGCATTCAAAATAACCTATAATA ATACAATACTAGATATTTTTTATATGAAGCTATGTAGGCT TGAATAGCAGGCAACCTAGGTTGAGGAATTTCAGCACCAA ACCAACGTAGCTATGCGCAAATTTGATTCAGGGGTGTCAG TCATAGAATATTTATTAATTGTATGCACTTATTTAGTAAA TTTTTTTGATGAAACTGTGTCACGTGACACCTCTCGAATC TTCTTCAATCCGCCCCTGCGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)20ttaaatgcattcaaaataacct(ata)3 |
|---|---|
| PCR product (bp) | 210 |
| fwd primer | emh11O01/U |
| fwd primer seq. | gatgtgtcgatgagattttggtca |
| rev primer | emh11O01/L |
| rev primer seq. | tagctacgttggtttggtgctgaa |
| fluor. primer | emh11O01/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-attgtgtcgatgagattttggtca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 222 | 222 |
| EPL-1 | 216 | 216 |
| LS1151 (S.linneanum) | 230 | 230 |
| LS1934 | 232 | 232 |
| LS4021 (S. incanum) | 228 | 228 |
| Nakate Shinkuro | 244 | 244 |
| Senryo 2 | 232 | 240 |
| Shironasu | 228 | 228 |
| WCGR112-8 | 238 | 238 |
| White Egg | 230 | 230 |
| PI 286106 | 229 | 229 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 9.0 |
| EW2009 | LG10 | 32.1 |
| LW2010 | E_03 | 36.2 |
| LWA2010 | LWA_03 | 36.21 |
| LWAE2012 | E_03 | 45.521 |
| LWF2_2022 | E_03 | 39.1 |
| N28F2 | E_03 | 15.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0217K02_T7_393431 Chromat_file:LE_HBa_217_K02-T7 SGN_GSS_ID:410625 (vector and quality trimmed) | 7e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0013J13_T7_128318 Chromat_file:LE_HBa_013_J13-T7 SGN_GSS_ID:145149 (vector and quality trimmed) | 2e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0076K13_T7_17785 Chromat_file:LE_HBa_076_K13-T7 SGN_GSS_ID:17785 (vector and quality trimmed) | 2e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0049F05_SP6_9848 Chromat_file:LE_HBa_049_F05-SP6 SGN_GSS_ID:9848 (vector and quality trimmed) | 2e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0222C10_T7_398605 Chromat_file:LE_HBa_222_C10-T7 SGN_GSS_ID:415799 (vector and quality trimmed) | 4e-09 |
| EST Name | Species | Strain |
|---|
