| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 42.399 |
| Annotation | |
| Source Name | emh11M23 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCACAAGCTGTAAGTGGATAAA TTAGAATCTCCATTTGAAGAGTAGCGTAGGTCATTGTTGC GTTGATTATGTTTGCATATGTAAGTTGGTGTCTTGTAATA CTAAAATTTGAAGCCATGTAACGTTGTTAGGATCGCAAAT TTATAGTTAATTATGTCTTTTTATGCACACACACACACAC ACACACACATATATATATATATATATAAATATACACACAC ATACACATATATATGAGGTTATCAAACCTAAAACTTTCTT ATAGATGATGTTCTTTGTGTATGTCCCACTCTATTTTTTT GGTTGTTGTGTTAGGACCAGGACTTTTGTTGTGGCCATAC ATATCCCCCTAGATAGTGCAATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)11a(ta)9aatat(ac)4atacaca(ta)3 |
|---|---|
| PCR product (bp) | 209 |
| fwd primer | emh11M23/U |
| fwd primer seq. | ccatgtaacgttgttaggatcgca |
| rev primer | emh11M23/L |
| rev primer seq. | tcctggtcctaacacaacaaccaa |
| fluor. primer | emh11M23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acatgtaacgttgttaggatcgca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 214 | 214 |
| EPL-1 | 212 | 212 |
| LS1151 (S.linneanum) | 252 | 252 |
| LS1934 | 212 | 212 |
| LS4021 (S. incanum) | 268 | 268 |
| Nakate Shinkuro | 212 | 212 |
| Senryo 2 | 214 | 214 |
| Shironasu | 212 | 212 |
| WCGR112-8 | 212 | 212 |
| White Egg | 214 | 214 |
| PI 286106 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 12.5 |
| ALF2 | AL03 | 6.2 |
| LWA2010 | LWA_03 | 39.598 |
| LWAE2012 | E_03 | 42.399 |
| N28F2 | E_03 | 22.8 |
| NAF2 | NA03.1 | 37.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0066B18_SP6_338374 Chromat_file:SL_EcoRI_066_B18-SP6 SGN_GSS_ID:355200 (vector and quality trimmed) | 4e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0019M09_SP6_227838 Chromat_file:SL_EcoRI_019_M09-SP6 SGN_GSS_ID:244664 (vector and quality trimmed) | 6e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0064I23_T7_49197 Chromat_file:LE_HBa_064_I23-T7 SGN_GSS_ID:49197 (vector and quality trimmed) | 9e-07 |
| EST Name | Species | Strain |
|---|
