| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 23.837 |
| Annotation | |
| Source Name | emh11E08 |
| Source Type | genomic |
| Source Sequence | ACATTCTTGTTCTAGATCCAATTTAGATTTTATTCTATTG CTTATTGCAAATATATGCTTTTCTACATTACTATGCTACT TCACACCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCGTGTGCAAGCAAAATACACCTCTGAAGGATA CCTCTTTCCCTTTTCCTGCGATCAGTATCTTCAATTTCAA AATACGCCGCCTAAGATTTTCCACAAGAATGACGGTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)19 |
|---|---|
| PCR product (bp) | 122 |
| fwd primer | emh11E08/U |
| fwd primer seq. | cattactatgctacttcacacccacc |
| rev primer | emh11E08/L |
| rev primer seq. | tactgatcgcaggaaaagggaaag |
| fluor. primer | emh11E08/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atttactatgctacttcacacccacc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 129 | 129 |
| EPL-1 | 129 | 129 |
| LS1151 (S.linneanum) | 97 | 97 |
| LS1934 | 129 | 129 |
| LS4021 (S. incanum) | 99 | 99 |
| Nakate Shinkuro | 141 | 141 |
| Senryo 2 | 129 | 129 |
| Shironasu | 109 | 109 |
| WCGR112-8 | 144 | 144 |
| White Egg | 129 | 129 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG10 | 3.8 |
| LW2010 | E_03 | 15.6 |
| LWA2010 | LWA_03 | 15.695 |
| LWAE2012 | E_03 | 23.837 |
| LWF2_2022 | E_03 | 15.1 |
| NAF2 | NA03.1 | 0.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
