| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 45.423 |
| Annotation | |
| Source Name | emh01F12 |
| Source Type | genomic |
| Source Sequence | CCTTCAATTTATTATTTTTCCTTAATGAGCTAAAACACAT CTTATTTGGGATGGAGGAAATAGTAGTATATAGTTATGTC ATTTTCAGTCAATGCTCATTTTCGGTCAATGCTCATTTTG CAACTGTAAAATCGTATTTATCCTAGATATCTTCTTCTCG TTCACTCCACCTTTCTTCTTGTTCACTCAGCCTTATTGCC ATGTGTCCCCCTTTCTCTTAAATATTGTAGCTATATATGG ACACTCATTACTTAATAAGATACACATACTATTCATATAT ATATAGAGGGATCTGTAGAGAGAGAGAGAGAGAGAGAGAG AGACAGAGATGGATAATGGTAATCATGCTGGTGGTTCAGA TGGAGGATTCCATAGCTATCGAAGATCCTCACAACCAGCT CCTTCCTATTCCCAAACTTCTTCCCTTGGTATGCTACCTA GCTTCTCTTTTACATTTACATTAATCTTTATATTTGATAT GTTTACTCGAGCTAAACGAACTCTATTAAAACCTATCTCT AATGTTCACAAGGTAGGAGTAAGGCTATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5gagggatctgt(ag)13 |
|---|---|
| PCR product (bp) | 236 |
| fwd primer | emh01F12/U |
| fwd primer seq. | tcactcagccttattgccatgtgt |
| rev primer | emh01F12/L |
| rev primer seq. | agtttgggaataggaaggagctgg |
| fluor. primer | emh01F12/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acactcagccttattgccatgtgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 231 | 231 |
| EPL-1 | 235 | 235 |
| LS1151 (S.linneanum) | 232 | 232 |
| LS1934 | 231 | 231 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 231 | 231 |
| Senryo 2 | 231 | 231 |
| Shironasu | 231 | 231 |
| WCGR112-8 | 231 | 231 |
| White Egg | 231 | 231 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 9.0 |
| EW2009 | LG10 | 32.1 |
| LWA2010 | LWA_03 | 36.124 |
| LWAE2012 | E_03 | 45.423 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
