| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 44.936 |
| Annotation | |
| Source Name | emg11I03 |
| Source Type | genomic |
| Source Sequence | CCAAAGCGATTTCTGGAATTTATGCATGGCAGATTTCTGA GCAAAAAGACGGTTCAAATCTAGGAAAATATTAGGCACAA GTGCCACCTGAATAAGTAGGCAAGCAGAAACAAACGTATG GTTGCAAGTAAAAATAAGCCTGGGAAGTGTTGGTGTATAT GTCTGCATATATATGTGTGTGTGTGTGTGTGTGTGTTTGT GTATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGTTTTTTACCTATCAGACTCCCGGCTGCC AAAATATCCTCCTCTACCTCCTTGGAAAGATCTTCTCTCA TCACCTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3(tg)11tttgtgtataa(ag)23 |
|---|---|
| PCR product (bp) | 209 |
| fwd primer | emg11I03/U |
| fwd primer seq. | attaggcacaagtgccacctgaat |
| rev primer | emg11I03/L |
| rev primer seq. | cagccgggagtctgataggtaaaa |
| fluor. primer | emg11I03/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-attaggcacaagtgccacctgaat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 212 | 212 |
| EPL-1 | 213 | 213 |
| LS1151 (S.linneanum) | 210 | 210 |
| LS1934 | 215 | 215 |
| LS4021 (S. incanum) | 249 | 249 |
| Nakate Shinkuro | 215 | 215 |
| Senryo 2 | 213 | 213 |
| Shironasu | 215 | 215 |
| WCGR112-8 | 215 | 215 |
| White Egg | 213 | 213 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 8.4 |
| EW2009 | LG10 | 31.0 |
| LWA2010 | LWA_03 | 35.58 |
| LWAE2012 | E_03 | 44.936 |
| N28F2 | E_03 | 11.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0028H14_SP6_138207 Chromat_file:LE_HBa_028_H14-SP6 SGN_GSS_ID:155038 (vector and quality trimmed) | 1e-08 |
| EST Name | Species | Strain |
|---|
