| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 2.398 |
| Annotation | |
| Source Name | emj01H11 |
| Source Type | genomic |
| Source Sequence | CCCGTGCTAGCATGGGCAGCAATGTTTAGTGTGTGTGTGT GTGTCTATGTGTATGTATGTGTGTGTGTGTGTGTGTATTA CACAAGCCCACAAATCCAATATGTATTTTTTTTATTTTGA TTTATATAAGTTTGATGGGTTAGACTTTAATGGGCATACT GGTGCCACTTCTATTGGTTTTGACAATGTCCATGGAGGCT TTGATTTTGGGGAAAGGTATGGAGGAGGGACGTCTCTCTT GGACTTTGCTAAAGCCTTCAAGTTTGTTATTGCCAACTCA TATTTCCGAAGAGAGAAATTCACTTGGTTACCTTTCATAG TATGGTAGCTAAGATCCAAATTGACTACGTACTCCTCCAA AAGGATGATAGAAGCCTTTGTAAGAATTGCAAGATACTTC CGAGTGAAAATATTTCTACTCAACATAGGCTTCTGATAGT GGACTTGAAAATTAAGAGGGGTAAAAGGAAGAAGGTTACT TATGCCCAACCGAGGATTAGATGGGTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)7tctatgtgtatgta(tg)9 |
|---|---|
| PCR product (bp) | 231 |
| fwd primer | emj01H11/U |
| fwd primer seq. | gctagcatgggcagcaatgtttag |
| rev primer | emj01H11/L |
| rev primer seq. | gagacgtccctcctccataccttt |
| fluor. primer | emj01H11/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-actagcatgggcagcaatgtttag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 238 | 238 |
| EPL-1 | 238 | 238 |
| LS1151 (S.linneanum) | 232 | 232 |
| LS1934 | 233 | 233 |
| LS4021 (S. incanum) | 226 | 226 |
| Nakate Shinkuro | 238 | 238 |
| Senryo 2 | 238 | 238 |
| Shironasu | 238 | 238 |
| WCGR112-8 | 238 | 238 |
| White Egg | 238 | 238 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| LW2010 | E_02 | 2.0 |
| LWA2010 | LWA_02 | 1.714 |
| LWAE2012 | E_02 | 2.398 |
| LWF2_2022 | E_02 | 13.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0026O04_T7_218012 Chromat_file:SL_MboI_26_O04-T7 SGN_GSS_ID:234838 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
