| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 3.464 |
| Annotation | |
| Source Name | emi06E01 |
| Source Type | genomic |
| Source Sequence | CTTTAAGTATTGTGGTAGTTGAAACATGAAACACTATAAA TTTTAAGTATGTTGTAGTTGGTTGAAATAATTGGTGACTC TCTATTTATGTTATTATTTTGTATGCCTTCCTGGAAATAG ATGTTTTGTCTATGTTTTTCTGCCTACATTGAATTGGAAG ATTGTGTTGGGCAGAGCACACCAACACTAGCAACGTCAGA AGAAACAAAACATATTTGGAAGATTGTGTGTGTGTGTGTG TGTGTGTATATATATAACTTTAATTAGAAGAAACTTAGTT CCCTAGTCAGAAGAAATAAAACATACACCAATACATACAA ACAATTATCTTAAATTTTTACGTTGATGATAGCTTCATTA ATTTTTTTTCAACATCACACTAATTGAAAGAACATTATTA TGTTACATATCAAACTAATCCACTAAATCATTTTTAACAT CACTCTTCACTTCAGCTACTTTTGTTGGTTGTTGGTCTTC TTCAATAAACCAAAAATCACAACATTTGTTTGGCTTGGAA ACTCAAGATCATATTACTTGAAAAACTTACAAGGAGTTTG AAATAAGGACTGCATTCTATCAAATAAAAGTACAAAAAAA ATACATAATACGATATTAAAAGAAAAAAATAGTACATACC CTATAGTGCCTACAATCGAGGAATCTACGTCCGGGGTTGT TATTTGTCCAGGAAATTCTTATAATTGGAGGACTCCCACA TGCATAAACAAGTCTTCTATTATAATTCATGAATTTAGCA AAGAAAGAAGGAGAAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)11(ta)5 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emi06E01/U |
| fwd primer seq. | cacaccaacactagcaacgtcaga |
| rev primer | emi06E01/L |
| rev primer seq. | ccaacaaccaacaaaagtagctgaa |
| fluor. primer | emi06E01/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atcaccaacactagcaacgtcaga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 302 | 302 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | 348 | 348 |
| LS1934 | 304 | 304 |
| LS4021 (S. incanum) | 310 | 310 |
| Nakate Shinkuro | 302 | 302 |
| Senryo 2 | 302 | 302 |
| Shironasu | 302 | 302 |
| WCGR112-8 | 302 | 302 |
| White Egg | 300 | 300 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 2.3 |
| LW2010 | E_02 | 2.6 |
| LWA2010 | LWA_02 | 2.857 |
| LWAE2012 | E_02 | 3.464 |
| LWF2_2022 | E_02 | 13.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0110D16_SP6_35118 Chromat_file:LE_HBa_110_D16-SP6 SGN_GSS_ID:35118 (vector and quality trimmed) | 1e-16 |
| TomatoBAC_end | BLASTN | LE_HBa0022I14_T7_133648 Chromat_file:LE_HBa_022_I14-T7 SGN_GSS_ID:150479 (vector and quality trimmed) | 3e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0098I08_SP6_30734 Chromat_file:LE_HBa_098_I08-SP6 SGN_GSS_ID:30734 (vector and quality trimmed) | 3e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0215F14_SP6_388464 Chromat_file:LE_HBa_215_F14-SP6 SGN_GSS_ID:405658 (vector and quality trimmed) | 8e-12 |
| TomatoBAC_end | BLASTN | SL_MboI0041J19_SP6_283126 Chromat_file:SL_MboI_41_J19-SP6 SGN_GSS_ID:299952 (vector and quality trimmed) | 2e-09 |
| EST Name | Species | Strain |
|---|
