| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 9.051 |
| Annotation | |
| Source Name | emg21A08 |
| Source Type | genomic |
| Source Sequence | CCTGGGAAGAAGAACGAAAATACTAAAAGGAAGGCTGGTG GATTTACCAAAATATGTAGCCTTTCTCCTCAGCTTCAGAA AATTACTGGGGAAGCAGAACTGGCAAGGACTGAGGTATCA CAATTCTGCATGCTTCTCTCTCTCTCTCTCTCTCTCTCTC TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCCATCTCTCTTCGTATTGTTTAAAGCTATGGAT ATTAACATGCATGAACTAAACCCTCACAAATGTTCTATGA AGGTGGTGAAGAGGATGTGGAGCTATATTCGTGAAAACAA TTTGCAAGATCCATCAAATAAGCGGAATATAAATTGTGAT GACATATTGCGTGAGCTTTTTGATGTGAATACCATAGACA TGTTCCAAATGAACAAGGCACTCTCAAAGCATATCTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)14(tg)14tctgtctg(tc)25ca(tc)3 |
|---|---|
| PCR product (bp) | 288 |
| fwd primer | emg21A08/U |
| fwd primer seq. | ctggcaaggactgaggtatcacaa |
| rev primer | emg21A08/L |
| rev primer seq. | ttccgcttatttgatggatcttgc |
| fluor. primer | emg21A08/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atggcaaggactgaggtatcacaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 294 | 294 |
| EPL-1 | 293 | 293 |
| LS1151 (S.linneanum) | 315 | 315 |
| LS1934 | 292 | 296 |
| LS4021 (S. incanum) | 314 | 314 |
| Nakate Shinkuro | 292 | 292 |
| Senryo 2 | 294 | 294 |
| Shironasu | 298 | 298 |
| WCGR112-8 | 278 | 278 |
| White Egg | 292 | 292 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG08 | 18.7 |
| LW2010 | E_02 | 8.4 |
| LWA2010 | LWA_02 | 8.566 |
| LWAE2012 | E_02 | 9.051 |
| LWF2_2022 | E_02 | 26.2 |
| NAF2 | NA02.1 | 21.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
