| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 2.127 |
| Annotation | |
| Source Name | emg11J01 |
| Source Type | genomic |
| Source Sequence | CCCAATTTTTGCAAATTCGCCCAAACTCGCCCATTAAGTA TGGGCTAAAAGAATGATTTTAAATATGGGTAATATTTGGG TTGATACCCATATTTAACCCATTAAAATATGGGTATTTTT GGGTAAATTATGGGTAACCCGTTTAACCCATACCTATCTT TAAGAAGATCGGTTATACACACAAATAGCTCGTATTACAG ACTAATGTTATATAGTTCTGCAATGCTTGAAATCTTCTAC ATATACAGTATGGTCCATGCTTTAGATTTCATTTTTTACA TTATCAAAACTTTGTCCAACAGTCCAAAATAGGTACTTTG AAGCCTATTTTGGGGTTAATTCTTGATAACTTCTGACTTT ATTTTCACCTATGAAGTGTTTTTATTCTCAAGCGAAGAGA ATAGATACTTTATTATGCTTTATAGTTGAGTTGTAATTGT AATGGTTTATGTATAATTCTTTACACTTGACTTGGAGATA GAAGATCCATTTAAATGGGTCTAACTTGCATTTTACCCAA CCCATATTATATCTTACCCATATTAAAATGGGCGGGTTTG AATTACAACCCATTTTTTCTCAATTCACTTTTAACCCGTC CAAATTCAATCCAACCTGTCCATTTGCCTGCACTAGGTAG AACTAACCAAAAGAAAGAGGTTGACTTGAATTTTCATTCA TTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTAATGAGAGAGATAGAGAC TTAATAATAATTTTTTTAAAAAAATTATTTTAGGATGCAA TTTCAAATTCTAATTGTGATGCTCAATTTTTATTTAATTT TCTTACATAAAGTTTTGGTTGGTTAAGCTTGTTTGTTTCT TACATATTTTCTCATTTTGGAGAACTATGTGGCTATTTTG CATGTTTGTAACTAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)28taatg(ag)3atagagact(taa)3 |
|---|---|
| PCR product (bp) | 298 |
| fwd primer | emg11J01/U |
| fwd primer seq. | tgcctgcactaggtagaactaaccaaa |
| rev primer | emg11J01/L |
| rev primer seq. | tgcaaaatagccacatagttctcca |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 306 | 306 |
| EPL-1 | 303 | 303 |
| LS1151 (S.linneanum) | 305 | 305 |
| LS1934 | 303 | 303 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 314 | 314 |
| Senryo 2 | 301 | 301 |
| Shironasu | 303 | 303 |
| WCGR112-8 | 303 | 303 |
| White Egg | 310 | 310 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| LWA2010 | LWA_02 | 1.474 |
| LWAE2012 | E_02 | 2.127 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0015C12_T7_274659 Chromat_file:SL_EcoRI_015_C12-T7 SGN_GSS_ID:291485 (vector and quality trimmed) | 8e-31 |
| TomatoBAC_end | BLASTN | SL_EcoRI0103A19_SP6_313752 Chromat_file:SL_EcoRI_103_A19-SP6 SGN_GSS_ID:330578 (vector and quality trimmed) | 1e-20 |
| TomatoBAC_end | BLASTN | SL_EcoRI0078C15_T7_346865 Chromat_file:SL_EcoRI_078_C15-T7 SGN_GSS_ID:363691 (vector and quality trimmed) | 4e-20 |
| TomatoBAC_end | BLASTN | SL_EcoRI0010K11_SP6_290927 Chromat_file:SL_EcoRI_010_K11-SP6 SGN_GSS_ID:307753 (vector and quality trimmed) | 4e-17 |
| TomatoBAC_end | BLASTN | SL_EcoRI0119J04_SP6_326442 Chromat_file:SL_EcoRI_119_J04-SP6 SGN_GSS_ID:343268 (vector and quality trimmed) | 1e-11 |
| EST Name | Species | Strain |
|---|
