| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 2.613 |
| Annotation | |
| Source Name | emg01L21 |
| Source Type | genomic |
| Source Sequence | NNGGGGGAAGAAGAGGAATCAAAATCAGAATCGGAATCTT GTTCTGAGAAAGGGTATGTTGCAGGGGAATCTGGCCTGGT TGCTTCTCATAGAATGCTTAAGGTAGTTGAATAATATGAA TAAAAGAAAAAGCTAATCCAAAAGTAAAAAATAAAAGTAA TAATAAAAGGTACGGAGTTAAGAACTAACCTGATCACTTT TAAATCAAATGCTTAAAATATATCATGCAACATAGGAAGT TAAATAGCTCGACAACACACAAAGTTAAAACTGTGTGTGT GTCTGTGTGAGAGAGAGAGAGAGAGAGCGAGAGAGAACGA GAGAGAGAGAGTGGGATCAGTATATGGCGAAACTAAAAAA GGNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)3aaagttaaaac(tg)5tc(tg)3(ag)9cg(ag)3aacg(ag)6 |
|---|---|
| PCR product (bp) | 289 |
| fwd primer | emg01L21/U |
| fwd primer seq. | atctggcctggttgcttctcatag |
| rev primer | emg01L21/L |
| rev primer seq. | tttagtttcgccatatactgatccc |
| fluor. primer | emg01L21/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atctggcctggttgcttctcatag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 287 | 287 |
| EPL-1 | 287 | 287 |
| LS1151 (S.linneanum) | 301 | 301 |
| LS1934 | 281 | 281 |
| LS4021 (S. incanum) | 288 | 305 |
| Nakate Shinkuro | 287 | 287 |
| Senryo 2 | 287 | 287 |
| Shironasu | 287 | 287 |
| WCGR112-8 | 289 | 289 |
| White Egg | 287 | 287 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| EW2009 | LG08 | 5.5 |
| LW2010 | E_02 | 1.7 |
| LWA2010 | LWA_02 | 1.585 |
| LWAE2012 | E_02 | 2.613 |
| LWF2_2022 | E_02 | 14.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0125M10_T7_193352 Chromat_file:SL_MboI_125_M10-T7 SGN_GSS_ID:210178 (vector and quality trimmed) | 1e-19 |
| TomatoBAC_end | BLASTN | LE_HBa0076J05_T7_17721 Chromat_file:LE_HBa_076_J05-T7 SGN_GSS_ID:17721 (vector and quality trimmed) | 1e-19 |
| TomatoBAC_end | BLASTN | SL_EcoRI0105B06_T7_315311 Chromat_file:SL_EcoRI_105_B06-T7 SGN_GSS_ID:332137 (vector and quality trimmed) | 3e-17 |
| EST Name | Species | Strain |
|---|
