| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 1.271 |
| Annotation | |
| Source Name | eme11C02 |
| Source Type | genomic |
| Source Sequence | CCACAAATGGGAGAATTTGTACCTATATTAAATTTTAGAG GACATGCAAAAAGCGATAATAGATGTCGTCGTTAAAAAGA GAGAAAGTATAAAAAAAAACAATTGAAATAAGAAAAGATG CAATTTGAGAAATTAAAAAAAAATAAAGAGAGAGAGAAAG AAATAAAAATAAGAAAAGAGTAATTTTTGTAAAAAGAGAA AGTATGAAAAAAAATAATTGAAATAAGAAAAGATACAATT TGAAAAATAAAAAAAATTAAAGAGAGAGAGAAAAAGAGAG AGAGAGAGAGAGAGGGCATGGAAAAAATGAAAATAAGAAA AGAGCAATTTTCGTAAAATGAGAAAGTATGAAAAAATAAT TGAAATAAGAAAAGATACAATGAAAAATCAAAAAAGAGAG AAAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCA TGGAAAAAAATTAAAATAAGGAAATTGCTAGCGAGTATTG AAGTCGCTAGAAGCGACAAGCGACACATGCTCGCCTCTAA CATCAAGGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3aa(ag)3t(ga)13 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme11C02/U |
| fwd primer seq. | gagagagagagagagggcatggaa |
| rev primer | eme11C02/L |
| rev primer seq. | ttgatgttagaggcgagcatgtgt |
| fluor. primer | eme11C02/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ACGAGAGAGAGAGAGAGGGCATGGAA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 249 | 249 |
| EPL-1 | 248 | 248 |
| LS1151 (S.linneanum) | 237 | 237 |
| LS1934 | 247 | 247 |
| LS4021 (S. incanum) | 234 | 234 |
| Nakate Shinkuro | 251 | 251 |
| Senryo 2 | 249 | 249 |
| Shironasu | 246 | 249 |
| White Egg | 248 | 248 |
| PI 286106 | 248 | 248 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.0 |
| ALF2 | AL02 | 0.0 |
| EW2009 | LG08 | 6.0 |
| LWA2010 | LWA_02 | 0.789 |
| LWAE2012 | E_02 | 1.271 |
| N28F2 | E_02 | 0.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0231G11_SP6_407169 Chromat_file:LE_HBa_231_G11-SP6 SGN_GSS_ID:424363 (vector and quality trimmed) | 2e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0246N22_T7_406203 Chromat_file:LE_HBa_246_N22-T7 SGN_GSS_ID:423397 (vector and quality trimmed) | 2e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0246E13_SP6_405333 Chromat_file:LE_HBa_246_E13-SP6 SGN_GSS_ID:422527 (vector and quality trimmed) | 2e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0241K20_SP6_402875 Chromat_file:LE_HBa_241_K20-SP6 SGN_GSS_ID:420069 (vector and quality trimmed) | 2e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0241C06_SP6_402042 Chromat_file:LE_HBa_241_C06-SP6 SGN_GSS_ID:419236 (vector and quality trimmed) | 2e-23 |
| EST Name | Species | Strain |
|---|
