| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 2.384 |
| Annotation | |
| Source Name | emd07A07 |
| Source Type | genomic |
| Source Sequence | TTTGATTTTCTACTAGGACCGTAGAAGCTCTGATACCATG TAAGAAATATTGGAGAAAAATATTATTGAATTGTTGTCTA CATTATTACATTGAGACCCTATTTATAGATACTATATTAG ACTCCTTTTCCAACTAGGATACTATAATACAATCCTTTTC CAAGTAAGATTCCATATACTATTACTATTCCTAATTCTAT TTTAAGTAGGATTGTAGATATTATTCTTATTCCTATTCCT ATTCTAACAAGAATGATGGTGCAGTTAGGCAAAAGAACTG GAAACTTGTCCCAGCTTGTGTATGGTGGACTTCTTGGAAG GAGAGGAACTATAGAATTTTTGAAGACATACAATTATGTG CAGAAAGTCAAGATAAATTGTATTCTTTTGTTTTATTTTT GGTGTAAAGAAAACTATGCTGACGAGGCTGAATCACTAGT TGATATGATAGGATCCTTGGGAAGAAGTAGCCTAAACTTG GTTGGTTTTTGCACTTACAGATTGTGTTCTTATAGTGCAA CACCAACACACACACACACACACACACACACGTGTTACCA GTTTTTAAAAAAAGAATCTTTCTTTCAGCCCAAATGGTCC ATTCATTGTTCAATGGAATTGGCATCAATATCTTTCTATG TATTCTGATTTAACTTTTAGATGCTGCATAGAAGGCTCTT A |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)13 |
|---|---|
| PCR product (bp) | 292 |
| fwd primer | emd07A07/U |
| fwd primer seq. | tggacttcttggaaggagaggaac |
| rev primer | emd07A07/L |
| rev primer seq. | ccatttgggctgaaagaaagattc |
| fluor. primer | emd07A07/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-aggacttcttggaaggagaggaac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 295 | 295 |
| EPL-1 | 295 | 295 |
| LS1151 (S.linneanum) | 290 | 290 |
| LS1934 | 295 | 301 |
| LS4021 (S. incanum) | 291 | 291 |
| Nakate Shinkuro | 295 | 295 |
| Senryo 2 | 295 | 295 |
| Shironasu | 295 | 295 |
| WCGR112-8 | 297 | 297 |
| White Egg | 295 | 295 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.6 |
| EW2009 | LG08 | 3.9 |
| LW2010 | E_02 | 2.0 |
| LWA2010 | LWA_02 | 1.702 |
| LWAE2012 | E_02 | 2.384 |
| LWF2_2022 | E_02 | 13.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0121K09_SP6_42352 Chromat_file:LE_HBa_121_K09-SP6 SGN_GSS_ID:42352 (vector and quality trimmed) | 1e-47 |
| TomatoBAC_end | BLASTN | SL_EcoRI0037J01_T7_281343 Chromat_file:SL_EcoRI_037_J01-T7 SGN_GSS_ID:298169 (vector and quality trimmed) | 7e-46 |
| TomatoBAC_end | BLASTN | SL_EcoRI0065N13_SP6_299803 Chromat_file:SL_EcoRI_065_N13-SP6 SGN_GSS_ID:316629 (vector and quality trimmed) | 3e-42 |
| TomatoBAC_end | BLASTN | LE_HBa0035O02_SP6_141591 Chromat_file:LE_HBa_035_O02-SP6 SGN_GSS_ID:158422 (vector and quality trimmed) | 2e-40 |
| TomatoBAC_end | BLASTN | SL_MboI0139N02_SP6_376621 Chromat_file:SL_MboI_139_N02-SP6 SGN_GSS_ID:393832 (vector and quality trimmed) | 1e-34 |
| EST Name | Species | Strain |
|---|
