| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 2.145 |
| Annotation | |
| Source Name | emd01F12 |
| Source Type | genomic |
| Source Sequence | CCCCCGTCATACCCAAAAGTGAAAGTAATACAAAGTAATA ACAAAGTAATAACAAAGTAAGTATACCAAAATATAGCTTC GAAGCAAGGGAGCACTTCAGACTACAAACTGAGGTCCTAA TCTGGAGGTCCGCTACCCTGTGCGTCTGAACCTGCGAGCA TGAAACGCAGCCCCTGAAGGAAGGGGGTCAGTACGAAGGA CGTACCAAATATGTAAAGCAGAAAGTACACACACACACAC ACACACACACACACACACATATATATATATATATATATAA GAAAGGCAAACTGAACATGGGCATAGGACTTAATTTTCTG TGCAAATATCAAAGAAGGGTTTAACTCATTTTCAAAATGT CGAAGGAACATTTGTATATTTATTAAAATAACTTGCAAAG GCTCAACGGACCGGAAAGATGGCGTCCTCCAATCTCGCGC CATACCACAGCATCACACTAGATAGTTTAATCCCGAAAGT CTCCAACATAATCACAAATGTAGGATGTGTGAGCTGGCGT CCCAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)16(at)10 |
|---|---|
| PCR product (bp) | 298 |
| fwd primer | emd01F12/U |
| fwd primer seq. | ggtcctaatctggaggtccgctac |
| rev primer | emd01F12/L |
| rev primer seq. | tccgttgagcctttgcaagttatt |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| LWA2010 | LWA_02 | 1.495 |
| LWAE2012 | E_02 | 2.145 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0225B19_T7_401647 Chromat_file:LE_HBa_225_B19-T7 SGN_GSS_ID:418841 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
