| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 9.664 |
| Annotation | |
| Source Name | emd01E11 |
| Source Type | genomic |
| Source Sequence | AACTCCGGAGGATTTATCTGGGTGAAATCTCTCACTCTGG AAGCCGGAGTGGGATCCCGAGGAAGTTAGCCTGCCTAGCC TGAGTAGTTACCACTTGGGCAAGCATGGCAAAGGCCGTGC GGAACTCACCATGAGTGACAGGCTTATCCCGGGGCCCTTG AGGTGCTTGACCCTCATTAGCCAGGGCTAGTCTGGCAGGT CTACCACGAGGCATCTTCTGAAACAAAGTAAGGATACCAT CAAGGGTCAAGAGCTAAACCAACTATTTACCGCAGGACAT AAGACATGAAGAAGTGAGACAATTCCTAGAACATTGTCGT AGCCTCCCACTTATAGGCATGGTGCACTTCACACACACAT ACACACACACACACACACACACACACATATATATGTATGT ATACGTATATTTATTTTTGTGGGATGACGACTTAACACTA ATGGATTGGGGGCATTAGGGCTATGTATTTATAGTGCACA TCAAAATGATGCACTCATATATATATACACACACACACAC ACACATACTTTCAAACGACGTAAATCATTTCTGAAACTAT TTCAATGCATTTTTAGGGTTAAAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)4at(ac)13(at)3 |
|---|---|
| PCR product (bp) | 259 |
| fwd primer | emd01E11/U |
| fwd primer seq. | caggtctaccacgaggcatcttct |
| rev primer | emd01E11/L |
| rev primer seq. | tgcccccaatccattagtgttaag |
| fluor. primer | emd01E11/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ACAGGTCTACCACGAGGCATCTTCT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 259 | 259 |
| EPL-1 | 261 | 261 |
| LS1151 (S.linneanum) | ||
| LS1934 | 259 | 259 |
| LS4021 (S. incanum) | 240 | 240 |
| Nakate Shinkuro | 259 | 259 |
| Senryo 2 | 259 | 259 |
| Shironasu | 255 | 255 |
| WCGR112-8 | 250 | 250 |
| White Egg | 259 | 259 |
| Population | Linkage Group | Position |
|---|---|---|
| EW2009 | LG08 | 20.3 |
| LW2010 | E_02 | 9.1 |
| LWA2010 | LWA_02 | 9.169 |
| LWAE2012 | E_02 | 9.664 |
| LWF2_2022 | E_02 | 27.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
