| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 13.351 |
| Annotation | |
| Source Name | emd01A03 |
| Source Type | genomic |
| Source Sequence | CCCCTAGAAACGTTGATTGAATATTTTTCTCTTCATTAAA ATTTATCGCTTTAGACAAAATCGTCTGGTCACATTTTTCT TCAATTATCCTACCATTACACACAAACACACACACACACA CAAACACACACACACACACACACACACACACACATATATA TATTGTTACACCTCGGGAGGGTACCCTAGACGTAACTGGC ACTTGGAGACTATTGCTAGCCCCCAAGCGAATCACCTAGT CTCATCACATTCGTTCAATCAATTTATTTACGAAAGATAT TTAATAAATATTTCTAACTGTTAGTGGGCTATCAGACTCA TCATCAACATCTATCATGTGAAGCAAGATTAAAAAAATGA ACTCAGTTTAAAAGTAGAATAATGGGGAAAAAGAAACCCC CAACAACAATTGTCATCTGTCTATGTCTATGAAGCCTCTA TAACTACTGTCTAAGAAGGTACCATGACAGGTCATGACTA CCACAATCAAAGAAAAATAACTCAATAAAACTAAAGAAAT AACCATCCTCCGAATGCAGGGGAGGACTCACCACAATCTG AAATCAAGAAGCTCTGAACATCAACGATTATTCTGCTGAA ATTCTTTGTCTGCTGAATCTGCATTAAAAAATGATACAGT GCCAAAGGAGCATTAGTACGTGGAATGTACTGTATGTAAA ATGGGCTAAAGTAAATAGTAAAGGCGAGACAGTATAGTAT GACCTCAGCTCATCGGTTTCTCAACCTCAACTCAAGATAA GGAGTAGAATTCTATTAAATCACCATCAATCAAGACTCAT ACTATCACATCAACATCAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)3aa(ac)8aa(ac)15(at)4 |
|---|---|
| PCR product (bp) | 178 |
| fwd primer | emd01A03/U |
| fwd primer seq. | cgctttagacaaaatcgtctggtca |
| rev primer | emd01A03/L |
| rev primer seq. | gggggctagcaatagtctccaagt |
| fluor. primer | emd01A03/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACGCTTTAGACAAAATCGTCTGGTCA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 183 | 183 |
| EPL-1 | 181 | 181 |
| LS1151 (S.linneanum) | 176 | 176 |
| LS1934 | 181 | 183 |
| LS4021 (S. incanum) | 174 | 174 |
| Nakate Shinkuro | 181 | 181 |
| Senryo 2 | 181 | 181 |
| Shironasu | 179 | 179 |
| WCGR112-8 | 181 | 181 |
| White Egg | 181 | 181 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 12.8 |
| ALF2 | AL02 | 12.9 |
| LWA2010 | LWA_02 | 12.969 |
| LWAE2012 | E_02 | 13.351 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
