+Marker Data: est_ped07j13

Crop eggplant
Population LWAE2012
Linkage Group E_01
Marker Type SNP
Map Position 38.476
Annotation
Source Name PED07J13
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd AAGGAAGTTCACCGAAACCATTGA
STS_primer_rev GAAGATGCGTTGAGTCTTTCCCAT
amplicon_seq AATTTGGGCTGAAAACTATGATCCTCAAAAGGACAAGCGTTTCAGTGGTTCAGTTAAGTTGCCACACATTCCTCGCCCTAAAATGAAGATTTGCATGCTTGGAGATGCCCAGCATGTGGAAGAGGTAATCTGCCTGAACTAGTCACATACTCACATATTCCTTATCTTTTACATTTGCATAAGCATCCCTTCGAGATTACTGTTAAGTTATAGGTGATGGATCTTTCGAGTCTTATACTCACTTTGAATAATACTAACATTGATCCAATTATCTTCTTCCTCGCTTTAGTGTGTTAATAATATGATATCATTTTTCATCAAAGAACTTTGAAATATTTCTAGTCACTGTGTAGCTTTAATTGCCCCTGTCTTGGCTATCCTGAGGTTTAGAGTTTAGGCATATAATACGAGTACCTTGTATATTAGATGGTGCAACTTCATTTTTTCCTACTGGGAGTTTCTTAGCTTGGAGGTAGTAGCAATTTTTACATGGAGTGGACCTGTTTAATCCTCGTAACTGTTTGGAATTTTGTGGTTACTAATGTACCTAAAGGCTAAAGTTACTGCTATAGATGATTTTGTTCAAGTGTGATTAATGCTTGTTGCATTTGTTTTCCAGGCTGAAAAGATTGGTTTGGAGTACATGGACGTGGAAAGCCTAAAGAAGCTTAACAAAAACAAGAAAGTTGGTTAAGAAGCTCGCAAAGAAGTACCATGCTTTCTTGGCATCAGAAGCTGTTATCAAGCAGATCCCCCGTCTCTTGGGGCCTGGCTTGAACAAGGCAGGCAAGTGCAATAAACTATTTTGATGTTTTAACTAGCTATAGACCATAAATGCCCATCTCATTTTGAAGTGGTTCATTTTGATCGTTTTTGCCCGTTTCTTGACTAGTTTTCATTAATCTTTAAAATGCAGGCAAGTTTCCTACACTTGTTTCCCACCAGGAATCACTCGAGTCCAAGGTTAATGAGACCAAGGCCACTATCAAATTCCAGTTGAAGAAGGTGCTTTGCATGGGAGTTGCCGTAGGAAATATGGATATGGAGGAGAAACAAATCTTCCAGAACGTGCAGATGAGCGTCAACTTTCTAGTGTCCTTGCTAAAGAAGAATTGGCAAAATGTGAGTTCACTTATCATCCTATTATTACCATTAACCTTATTGTTTCTTCGAGTCTGATAACCTCATTCAACATTCTAACTTATTACCAATGCCTCATTGTCGTTAACGCTAACAGGTAAGATGCTTTAACTAGTT
SNP_position 239
allele_1 T
allele_2 C
ASP_primer_S GCGGGCGGTGATGGATCTTTCGAGTCTTATACT
ASP_primer_L GCGGGCAGGGCGGCGGTGATGGATCTTTCGAGTCTTATCCC
Common_primer AAAGCGAGGAAGAAGATAATTGGATCA
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 T T
LS1934 T T
WCGR112-8 C C

Population Linkage Group Position
LW2010 E_01 41.9
LWA2010 LWA_01 37.39
LWAE2012 E_01 38.476
LWF2_2022 E_01 154.3

DB Program Definition E-Value

EST Name Species Strain