+Marker Data: SOL8388

Crop eggplant
Population LWAE2012
Linkage Group E_01
Marker Type SNP
Map Position 2.858
Annotation
Source Name SEP05D24C
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document

Typing_Method Tm-Shift
Marker_Class SOL
STS_primer_fwd ACCATACAATTGCCCATATGCAGG
STS_primer_rev GAAGAGTGCCATGCTCCTTTGAAT
amplicon_seq NNGTACATTCAATCATCGTTATGTCAAATCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGCTGACGGTTAGTTCTTCTCTCTTTTTTTCTCCGTCTTTTTTAACCTTTGTTCTGAAGGGGAGTCTTGGTGCAATTGGTAAACTTCTCTCAATGCTCCAGTTATCACATTATTTCGTTGTTGTTACTGCTCTCGTATGTGTATTCCCTTTTTCAAACTGATTCGAAATGTTTTACTTAAGCCGAAGGTTATCGGAAACCACCTCTCGATCTCTTACAAGGTAGGAGTAAAGTCTGCGTATAATCTACCCTCCTTAGACATCACTTGTGGGATTACTTTGGATATGTTGTTGTAATTATACAGTTTTCCAGCATAAGGAAAAGAAGCACAAACATCCAGTTCTTTGTGCTTCTTTATCAACTGCCAAAAGTTGAACTGCCTTTTTTGGAAGACGGCCAAATCCCAATGATATTCACTTACCCTTCTAAGTGAACACTGAAAGAAAAGCTTTAGAAATCATTATTAACCTTCCAGAAAGATCTGGACTAATAAGAGAAATGACGAGTTCAAGTTGGTTCTACAAACAACTAATGCATACCGCTCTCAAACAACAAGTTGGTTGAAGATTGAAAATTCTGAATCTGTCGTCTGTCAAAGGAATAAACTGATGGCTGTTTCTTTTTCTCCTTTTTTCCCCCTCTATTTAAAGTTAGATCTTGGTCTCCTATTTGATACTTCGAGGAAAATCTGTACTATAACCTTTTCAAAAAAACAAGGTAAAAGAAAGACCAACACGATCAACTAGTTTTCTTTATCTAATTGTTGAAGTGATGTATACATTTTGTTACATCTATAACTTTAGCTGCTTTATTCATCATCATTTTAGCATTTTTCAACTGCTAGGAGGCTCATATTTTTATGTCCGCGTTTTTCTTTTATGGTCAGATACGAAGGCAGATAAGAGCATGATTAAATTTAGTTGTTCGCTTACCAATTAATTTTCCGATTAGCATTTAGCCTTGATATGATGAATGAGTTTCTTCTTTGTTGATTTTCACATTGTTCCTACTGCAGTGCGCTTGTTTCAAAAGGTCATGTGAGTAATAGTTCTTTTGCTGTTTTCTGGAATAGGTGTTTAACTGTTTCGGTCACCAGTTTTGCCTGCACTTTGAGGCTTTCAATCTTGGATTGGCACCGGTATACATGGCATTCCTTCGTTTTATGGGTGATGATGATGATGCAAAAAGATTTAGTTATAGTCTTGAAGTAGGTGGATTNN
SNP_position 248
allele_1 A
allele_2 G
ASP_primer_S GCGGGCAGATCGAGAGGTGGTTTCCGATAACCT
ASP_primer_L GCGGGCAGGGCGGCAGATCGAGAGGTGGTTTCCGATAAACC
Common_primer TCCCTTTTTCAAACTGATTCGAAATGT
enzyme Native Taq
dye SYBR Green I

Line allele-1 allele-2
AE-P03 G G
LS1934 G G
Nakate Shinkuro G G
WCGR112-8 A A

Population Linkage Group Position
LW2010 E_01 0.6
LWA2010 LWA_01 1.235
LWAE2012 E_01 2.858
LWF2_2022 E_01 197.3

DB Program Definition E-Value

EST Name Species Strain