| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 40.309 |
| Annotation | |
| Source Name | emj01K05 |
| Source Type | genomic |
| Source Sequence | CCGACCCAATTAAAACCTACCTTTGGGCTTCTATTCCTTT TTGGGAATCCTCCACAACTTTTATTAGTTTAGGAGCTAAT GATTTAAATACACTCTAGTTTGAGATTACAAATCTTAGTA AATTTTGGTGTATTTAAATATATCCAAAAATATGTATTTT AAAACATATAGATTTAAAATTAGATATAATTTATTTTTAA TACATTGTATTTAAATCAAGTGTGCTTGCATGTTTTTGGG AATACATAGTTGAATCTCGCTCCTCTCTCCCATCTTGTTC ACCACTTTCCTATGTATTTGATATTTAGAAACATGTGAAT CACACCAAGCATATACATATACATGTTTCTAGTGTATATC TAATGCGATTCTTACATATTTGAGATACATGACTATTTCA CTTGCCACTCTCTGTAATTTTGGTGTAATGATAACAAAAT CATATATCTAAGTGTATCTTTCTCAATATATAAATAAAAA ATATTTTTAATTAGTGTTCAGATATGTAATTATATGAAAG TATTAAGTACAATGAGTGTGTGTGTGTGTGTGTGTGTGTG TATATATATATATATATATATATATATATAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGTATGGATGCATGTTTGATA AGGATGGCCACCTTGCGAAAAATATGGCAAAATGCATCTA GAAAAATGTAGAGATGGAGGGAATGGTTGCTATAAGTGTG G |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)12(ta)14t(ag)16 |
|---|---|
| PCR product (bp) | 251 |
| fwd primer | emj01K05/U |
| fwd primer seq. | tcacttgccactctctgtaattttgg |
| rev primer | emj01K05/L |
| rev primer seq. | gccatccttatcaaacatgcatcc |
| fluor. primer | emj01K05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acacttgccactctctgtaattttgg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 233 | 233 |
| EPL-1 | 249 | 249 |
| LS1151 (S.linneanum) | 263 | 263 |
| LS1934 | 251 | 251 |
| LS4021 (S. incanum) | 279 | 279 |
| Nakate Shinkuro | 249 | 249 |
| Senryo 2 | 249 | 249 |
| Shironasu | 253 | 253 |
| WCGR112-8 | 257 | 257 |
| White Egg | 233 | 233 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 41.7 |
| ALF2 | AL01 | 34.0 |
| LW2010 | E_01 | 44.2 |
| LWA2010 | LWA_01 | 36.386 |
| LWAE2012 | E_01 | 40.309 |
| LWF2_2022 | E_01 | 151.5 |
| NAF2 | NA01 | 0.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0043I10_T7_240067 Chromat_file:SL_EcoRI_043_I10-T7 SGN_GSS_ID:256893 (vector and quality trimmed) | 2e-06 |
| TomatoBAC_end | BLASTN | SL_EcoRI0020C22_SP6_228113 Chromat_file:SL_EcoRI_020_C22-SP6 SGN_GSS_ID:244939 (vector and quality trimmed) | 2e-06 |
| EST Name | Species | Strain |
|---|
