| Crop | eggplant |
|---|---|
| Population | LWAE2012 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 44.291 |
| Annotation | |
| Source Name | emf01E10 |
| Source Type | genomic |
| Source Sequence | CTAGCCCATGGACCAGGCCGACCCCGCCATATCCAACTGA CCTCGGAAGATATATATATATATATATATATATATAGTAT ATTAAGCACAACCAAAACTGGCTCGGGAACCGGCGAACGA AAATATAGTGGCGCGAATAGAGTAGAGTGGAGTGTAGGCA TAAAAGTCATTTTTTGAATTTGAACTTGATTGTAAACCTG TATTTGGGGACAAAGCGGTTATAAATCAAATTACACTTTA AAGATTCTTACCAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)13 |
|---|---|
| PCR product (bp) | 195 |
| fwd primer | emf01E10/U |
| fwd primer seq. | ccatatccaactgacctcggaaga |
| rev primer | emf01E10/L |
| rev primer seq. | taaccgctttgtccccaaatacag |
| fluor. primer | emf01E10/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acatatccaactgacctcggaaga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 198 | 198 |
| EPL-1 | 201 | 201 |
| LS1151 (S.linneanum) | 187 | 187 |
| LS1934 | 196 | 196 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 198 | 198 |
| Senryo 2 | 201 | 201 |
| Shironasu | 196 | 196 |
| WCGR112-8 | 198 | 198 |
| White Egg | 190 | 190 |
| PI 286106 | 196 | 196 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 47.3 |
| EW2009 | LG03 | 112.7 |
| LW2010 | E_01 | 46.4 |
| LWA2010 | LWA_01 | 40.118 |
| LWAE2012 | E_01 | 44.291 |
| LWF2_2022 | E_01 | 148.7 |
| N28F2 | E_06 | 78.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
