| Crop | tomato |
|---|---|
| Population | EXP2k_tm_081031 |
| Linkage Group | T11 |
| Marker Type | SSR |
| Map Position | 55.34 |
| Annotation | |
| Source Name | 343897S |
| Source Type | genomic |
| Source Sequence | aatgataaatgattctccgattaaaaaaggctatcatgtc attcttctattgagataaaagaaatatccacatttttttt aataaaaaaaagacatctcattagttttgggagcaaatac aaaatcatatcaatcttctttatttatttataaacatata atgaatcaataaccataattcaatatgaaatcgataaaat tattcctaaaattacaataagacatttactcaaaaaagga taaatgatcacatttcaatcctgaatctacacttccatta tgcataaggttgcaaTATATATATAcaTATATATATATAT ATATATATATATATATATAcaaAGAGAGAGAGatgactat agacaacgtgatgtggcacCTCTCTgtggccttcattttt atttaactttttttttcttcttttttcaactttttttaaa cgataacnnaactattatatcatcaaaatattttttccaa actattacaaacaaatattttattcatggaggaacattga taacaaACACACttcaaatcttttttattcatctcactta taataaaag |
| Developer | NIVTS |
| Document | Ohyama et al. (2009) Mol. Breed. (in press, DOI: 10.1007/s11032-009-9265-z) |
| motif | (ta)5ca(ta)16caa(ag)5atgactatagacaacgtgatgtggcac(ct)3 |
|---|---|
| PCR product (bp) | 274 |
| fwd primer | |
| fwd primer seq. | tcctgaatctacacttccattatgc |
| fwd postlabel primer | tma0279U |
| fwd postlabel primer seq | acctgaatctacacttccattatgc |
| rev primer | |
| rev primer seq. | GTGTGTttgttatcaatgttcctcc |
| rev postlabel primer | tma0279L |
| rev postlabel primer seq | gtttgtgtttgttatcaatgttcctcc |
| postlabel dye used | R6G-ddCTP |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| A10 (PL11) | 260 | 260 |
| Ailsa Craig | 272 | 272 |
| Fixed Timely | 274 | 274 |
| LA716 (S.pennellii) | - | - |
| LA925 | 282 | 282 |
| M82 | 260 | 260 |
| MMF (Fixed Momotaro) | - | - |
| Micro-Tom | 260 | 260 |
| PL9 | 272 | 272 |
| Reika | 260 | 272 |
| Population | Linkage Group | Position |
|---|---|---|
| EXP2k_tm_081031 | T11 | 55.34 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
