+Marker Data: AFA09A11

Crop bunching_onion
Population DJF2
Linkage Group ChrX
Marker Type SSR
Map Position 35.5
Annotation
Source Name AB499396
Source Type genomic
Source Sequence
Developer NIVTS
Document Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223
motif (ac)3a(ta)3cat(ac)17at(ac)3gtacataca(ta)3
PCR product (bp) 203
fwd primer AFA09A11-U
fwd primer seq. agaactctctgttcgctcattcca
rev primer AFA09A11-L
rev primer seq. gtttgcgagacttatatcgcctcgctta
fluor. primer AFA09A11(FAM)
dye FAM
fluor. Primer seq. FAM-agaactctctgttcgctcattcca
PCR condition 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C
polymerase Toyobo rTaq DNA polymerase
Genebank No. AB499396
annotation
similar marker
product size in J 200
product size in Kaizuka-Wase 180+190
product size in Iki-White
product size in Tender Pole
Line allele-1 allele-2
C1s-11s-25s-7
Cho1s-1s-2s-2s-8s 184 184
D1s-15s-10s-8 206 206
F1s-7s-17s-3s-1 191 191
J1s-14s-23s-9 200 200
K1s-5s-2s-2s-4s-5 179 179
Chiang_mai
Kaizuka_Wase
Population Linkage Group Position
DJF2 ChrX 35.5
FA 5b 11.8
KiCF2 6a 254.1
DB Program Definition E-Value
EST Name Species Strain