| Crop | bunching_onion |
|---|---|
| Population | DJF2 |
| Linkage Group | Chr2a |
| Marker Type | SSR |
| Map Position | 151.3 |
| Annotation | |
| Source Name | AB499346 |
| Source Type | genomic |
| Source Sequence | |
| Developer | NIVTS |
| Document | Tsukazaki et al. (2008) Theor Appl Genet 117:1213-1223 |
| motif | (ta)3tctatatgt(ac)13 |
|---|---|
| PCR product (bp) | 179 |
| fwd primer | AFA01E09-U |
| fwd primer seq. | accaacctacttgagggattgcta |
| rev primer | AFA01E09-L |
| rev primer seq. | gtttctgtgtatgcaggcaatttgg |
| fluor. primer | |
| dye | FAM |
| fluor. Primer seq. | FAM-accaacctacttgagggattgcta |
| PCR condition | 94C_2min->(94C_30s->65C_30s,-1C/cyc->72C_30s)x10->(94C_30s->55C_30s->72C_30s)x35->72C_4min->10C |
| polymerase | Toyobo rTaq DNA polymerase |
| Genebank No. | AB499346 |
| annotation | |
| similar marker | |
| product size in J | 180 |
| product size in Kaizuka-Wase | 170 |
| product size in Iki-White | |
| product size in Tender Pole |
| Line | allele-1 | allele-2 |
|---|---|---|
| C1s-11s-25s-7 | ||
| Cho1s-1s-2s-2s-8s | 179 | 179 |
| D1s-15s-10s-8 | 160 | 160 |
| F1s-7s-17s-3s-1 | 180 | 180 |
| J1s-14s-23s-9 | 180 | 180 |
| K1s-5s-2s-2s-4s-5 | 177 | 177 |
| Chiang_mai | 180 | 180 |
| Kaizuka_Wase |
| Population | Linkage Group | Position |
|---|---|---|
| DJF2 | Chr2a | 151.3 |
| KiCF2 | 2a | 130.0 |
| SaT03 | 2a | 142.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
