| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 44.0 |
| Annotation | |
| Source Name | emi03B14 |
| Source Type | genomic |
| Source Sequence | CTAAGAAATTATGAGCCCGGGTACTATCTCGACAGGCAAC CCAACTGCTTCTAGCCTCCTGTTGCGAGGTCTGGTGGGCT ACCAACTGGGTCAATAACTGTACAGCCTCTCTTAGCTAGG GCAAGGCTAGGGTTCCAAGGTTTCGTCCTAAAGGCTTTGA TTTCATTTCTTTGTAGTTTTCCCAAGGTATGTGAGTTGAT TTCTCTGTAGTTTTCCCAAGTTCCTTGTTTAGTATTTTAC CTTTACTTTAAATTCTTTAAGTTAATATGCATGCTTATGA TGATTTCACGATATTTATGTTACCAAATGTCATTATGAAG TTTAACAACTATTTTGCTATATATATATGTGTGTGTGTGT GTGTGTGTGTGTATGTGTGTGTGTGTATGTGTGTGTGTGC ATATTTAACTAATGATGATGATTTAATGCTAGATTTCAGT GTGATAAAGGCTGGGCATTCTTTTATTTTTCTTTAAAAGA GAAATTTCCTTAGGACTTATGCGATTTATGATTGTTCCAT GATAAAGCCTAATCCACCTATTTTTCAAGTTAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5(tg)12ta(tg)6ta(tg)6catatttaactaat(gat)3 |
|---|---|
| PCR product (bp) | 283 |
| fwd primer | emi03B14/U |
| fwd primer seq. | cccaaggtatgtgagttgatttctctg |
| rev primer | emi03B14/L |
| rev primer seq. | aaagaatgcccagcctttatcaca |
| fluor. primer | emi03B14/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-accaaggtatgtgagttgatttctctg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 331 | 331 |
| EPL-1 | 289 | 289 |
| LS1151 (S.linneanum) | 289 | 289 |
| LS1934 | 292 | 292 |
| LS4021 (S. incanum) | 317 | 317 |
| Nakate Shinkuro | 290 | 290 |
| Senryo 2 | 289 | 289 |
| Shironasu | 291 | 291 |
| WCGR112-8 | 289 | 289 |
| White Egg | 329 | 329 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 44.0 |
| LW2010 | E_12 | 50.3 |
| LWA2010 | LWA_12 | 46.329 |
| LWAE2012 | E_12 | 47.194 |
| LWF2_2022 | E_12 | 55.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
