| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_12 |
| Marker Type | SSR |
| Map Position | 58.1 |
| Annotation | |
| Source Name | EMB01O01 |
| Source Type | genomic |
| Source Sequence | CCAAAAACTTTGGAAGCCCATTGTTTTCCTTGCAATTGAG AAATTTGCAGAGCATTACTGCATTAGGGTTTCTGAGGTTT AACATCGCCGTTGGCTTCTTAGAGCTTTACAATCTTCAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA AGCAATGGGTAAGTCTAACCATAGTTGTTCCTAAATCTTA CATGTAATTTTGTACTGTAAGGAATTTATTGATTTTCAAT TTCTTTTGTATATAGCAAGAATCAAAGTTCATGAGCTGAG ACAGAAATCCAAGACTGAGCTTTTAGCTCAATTGAAGGAT CTTAAAGCAGAACTTGCTCTCCTCCGCGTCGCCAAAGTCA CTGGCGGTGCCCCTAACAAGCTCTCCAAGATGTAACTTTT CTACCCTTTTGCTCTTTGTGAATTTAACATGAATTAATTT GTTGAAACCCCTTTTGGTTATCGAACCCCCTTAGTGAAAA TACTGGTTAAATGACGGGTTTTTATGTGGGAGATACGGTA ATGTTTCTGAATTGAAATGTGGGTTTGATGCAGTAAGGTG GTGAGGCTATCAATAGCACAAGTGTTGACTGTGATAAGCT TGGC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (AG)18 |
|---|---|
| PCR product (bp) | 385 |
| fwd primer | |
| fwd primer seq. | ttaacatcgccgttggcttcttag |
| rev primer | EMB01O01pt |
| rev primer seq. | gtttcgataaccaaaaggggtttcaaca |
| fluor. primer | |
| dye | FAM |
| fluor. Primer seq. | FAM-TTAACATCGCCGTTGGCTTCTTAG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| PI 286106 | 389 | 389 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_12 | 58.1 |
| EW2009 | LG11 | 7.9 |
| LWA2010 | LWA_12 | 59.552 |
| LWAE2012 | E_12 | 59.433 |
| N28F2 | E_12 | 59.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
