| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 60.5 |
| Annotation | |
| Source Name | emg11P16 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN NNNNNNNNNNNNNNNNNNNNNCCCTAGTTACCTCACCACC AAATTTTGAAATTCAAAAAAAAATCCAGTGTCTCATCAAA AACCCCTCAGTGGTCCATTTTTCCACCAAAACTTCCAGCA TCAATTTCCTTTTCAGGACAGTGAGGCTTTGTGACTGACA AATTGTAGTGCTTACCACCCAAATGGGTATATTGTACTCG AACTCTCCAGAATACGCTGAAATGATCCGTGGAATACAAT TCAGAGGCTTTTGACACAACTTAAGCCCATTTTAGGTAAC CACTTAAAAATAAGTTTTCCTCTATTTTCAATCAACCACA CATTTTCGCCAATTTCTTTTGAGTAGTTTGATTCCGTAGG CAAAAAGCATACTCGACAACCTAATCAGAGGCAGACCACG TGGAGTAGTCGAACGGCATGTGCACCAGTTAACTTAGAAT TCTTCATATGTAAATATATATATAAATATATATATACATA CACACACACACACACACACACACNNNNNCACACACACACA CATATATATACACACACAAAAAAAAAAAAACACACCCCTT AAGGAAGGATGACATATTCAACTGTGCCCCCAAAACACAA AACTAATTGGGGGAACTGATTGAACATGCAACTTAGCCTT GATATCTCGTGTGACATTGTGGGTTTGAATCCAAAACAGC TGCAACCCCTTTTTTTTTGGGCTTCTGCTAGCAAGGCCAN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5aa(ta)5cat(ac)12nnnnnc(ac)6a(ta)3t(ac)4aaaaaaaaaaaa(ac)3 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | emg11P16/U |
| fwd primer seq. | tcaatcaaccacacattttcgcc |
| rev primer | emg11P16/L |
| rev primer seq. | attagttttgtgttttgggggcac |
| fluor. primer | emg11P16/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acaatcaaccacacattttcgcc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 290 | 290 |
| EPL-1 | 290 | 290 |
| LS1151 (S.linneanum) | 284 | 284 |
| LS1934 | 296 | 296 |
| LS4021 (S. incanum) | 286 | 286 |
| Nakate Shinkuro | 290 | 290 |
| Senryo 2 | 290 | 290 |
| Shironasu | 290 | 290 |
| WCGR112-8 | 290 | 290 |
| White Egg | 294 | 294 |
| PI 286106 | 297 | 297 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 60.5 |
| LW2010 | E_06 | 67.7 |
| LWA2010 | LWA_06 | 64.882 |
| LWAE2012 | E_06 | 70.468 |
| LWF2_2022 | E_06 | 82.0 |
| N28F2 | E_06 | 97.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
